BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2026.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSO3012 [V] COG1132 ABC-type multidrug transport system, ATPase ...    49   6e-06
PM1940 [CR] COG0604 NADPH Pmu Pasteurella multocida                    31   1.2  
DR1572 [R] COG3973 Superfamily I DNA and RNA helicases Dra Deino...    30   3.2  
ECs4091_1 [E] COG0067 Glutamate synthase domain 1 Ecs Escherichi...    28   6.6  
gltB_1 [E] COG0067 Glutamate synthase domain 1 Eco Escherichia c...    28   6.9  

>SSO3012 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components Sso Sulfolobus solfataricus
          Length = 863

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 27  QGGLHEHVIPVRAFPITSPESGLSLVSSDGHELAWIDTLDQVDAATRRLIEEELASREFM 86
           +G +++ ++P   FPIT P + + L    G E+  I+   +++  +R+++E  LA    +
Sbjct: 732 KGKVYKALVPKMLFPITKP-TFIGLYDESGKEIFLIEDYTKLEENSRKVLENALAYNNLI 790

Query: 87  PEIERIVSVSTFATPSDWTVQTTRGTTTFTLKGEEDIRRLAAPALLIADSHGIQFLIRDQ 146
             +++I  ++      +W V+T RG       G  ++  L +  +LI  +  +  +  D 
Sbjct: 791 FLVKKINGINIKGDQLEWDVETNRGLIKVYTIGRRNVVVLESKVVLIDKNDNLYEI--DL 848

Query: 147 KALDKHSRKIL 157
             +DK S K+L
Sbjct: 849 DKIDKKSFKLL 859


>PM1940 [CR] COG0604 NADPH Pmu Pasteurella multocida
          Length = 236

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 28  GGLHEHVIPVRAFPITSPESGLSLVSSDGHELAWIDTLDQVDAATRRLIEEELASREFMP 87
           G L    I V  FPI         ++  G+EL  I T+ +  A  ++ + + LAS +  P
Sbjct: 151 GALSHDDIAVPVFPILGKH-----LTVRGYELFEITTVPEKLAQAKKFVFDGLASGQLKP 205

Query: 88  EIERIVSVSTFA 99
           EI+++ +    A
Sbjct: 206 EIDKVFAFDEMA 217


>DR1572 [R] COG3973 Superfamily I DNA and RNA helicases Dra Deinococcus
           radiodurans
          Length = 501

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 57  HELAWIDTLDQVDAATRRLIEEELASREFMPEIE 90
           H++   D LD   A  RRL+EEE  SR  +PE E
Sbjct: 398 HDVFAQDPLDGYRAGFRRLVEEEAVSRLRVPEEE 431


>ECs4091_1 [E] COG0067 Glutamate synthase domain 1 Ecs Escherichia coli
           O157:H7
          Length = 409

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 36  PVRAFPITSPESGLSLVSSDGHELAWIDTLDQVDAATRRLIEEEL 80
           P R F I + E G  L  +    + +++   ++ AA RR++EEEL
Sbjct: 93  PDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIVEEEL 137


>gltB_1 [E] COG0067 Glutamate synthase domain 1 Eco Escherichia coli K12
          Length = 409

 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 36  PVRAFPITSPESGLSLVSSDGHELAWIDTLDQVDAATRRLIEEEL 80
           P R F I + E G  L  +    + +++   ++ AA RR++EEEL
Sbjct: 93  PDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIVEEEL 137