BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2009.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0313 [E] COG0765 ABC-type amino acid transport system, permeas... 262 5e-70 DR0565 [E] COG0765 ABC-type amino acid transport system, permeas... 212 5e-55 CC1440 [E] COG0765 ABC-type amino acid transport system, permeas... 203 3e-52 STM1952 [E] COG0765 ABC-type amino acid transport system, permea... 201 1e-51 ZyecS [E] COG0765 ABC-type amino acid transport system, permease... 200 2e-51 >PA0313 [E] COG0765 ABC-type amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 230 Score = 262 bits (669), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 142/214 (66%), Positives = 169/214 (78%) Query: 2 LMEILELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVS 61 L ++ELL A P L +G YT+LFA SMV GL+LGF +AV R+ + AAVYVS Sbjct: 11 LANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVS 70 Query: 62 MMRGTPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQWN 121 RGTPLLVQIFV+YYGLP +GIEF+P+TAG+L L+LN AYLSES+RGAILG+ +GQW Sbjct: 71 AFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWE 130 Query: 122 ASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIA 181 A SVGLT+ QTL II PQA+R+AVPS+SN+LISLIKDTSL+SVITVTELMLATKEVIA Sbjct: 131 AGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIA 190 Query: 182 VTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKL 215 TF+PLPLY+AAA IYW LS FE +Q LE +L Sbjct: 191 ETFQPLPLYLAAAGIYWLLSALFERVQKALENRL 224 >DR0565 [E] COG0765 ABC-type amino acid transport system, permease component Dra Deinococcus radiodurans Length = 226 Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 117/216 (54%), Positives = 153/216 (70%) Query: 2 LMEILELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVS 61 L IL+ A PTL TL FALA+MV GL LGF +A+AR+ + + ++VS Sbjct: 6 LQSILQSAWHALPTLLAATPVTLGFALAAMVLGLPLGFAVALARLSRLGWLRTLSGLFVS 65 Query: 62 MMRGTPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQWN 121 +RGTPLLVQIFV+YYGLP LGI+FSP+ GV+ L+LNA AYLSE++R AIL + GQ Sbjct: 66 FIRGTPLLVQIFVIYYGLPSLGIQFSPVVGGVIALTLNAAAYLSETIRAAILSIPPGQRE 125 Query: 122 ASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIA 181 A+ S+GL+ QT+R II+PQA R+A+PS+SNTLI L+KDTSLVSVITV EL+ + + VIA Sbjct: 126 AATSLGLSGAQTMRLIILPQAARVALPSLSNTLIGLVKDTSLVSVITVVELLRSAQLVIA 185 Query: 182 VTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLGK 217 TF P Y+AAA IYW +S E +Q LE++ + Sbjct: 186 RTFEPFGPYLAAALIYWLVSSLLEVVQRALERRFSR 221 >CC1440 [E] COG0765 ABC-type amino acid transport system, permease component Ccr Caulobacter vibrioides Length = 219 Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 106/215 (49%), Positives = 142/215 (66%) Query: 6 LELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVSMMRG 65 L+LL+Q+AP L KG GYT++ ++ M G+VLGF+LA+ R+ + WPA VYVS RG Sbjct: 5 LDLLRQSAPLLLKGAGYTIVLSVIGMSIGVVLGFLLALMRLSRSALLRWPAGVYVSAFRG 64 Query: 66 TPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQWNASYS 125 TPLLVQ+F++YYGLP G+E PL A + SLN AY E LR AI V +GQW A+ Sbjct: 65 TPLLVQLFLIYYGLPQFGLEMPPLVAAGIGFSLNVAAYSCEILRSAIAAVDKGQWEAASV 124 Query: 126 VGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFR 185 +G++ QTLR +I+PQA R AV +SN+ ISL+KDTSL + I V EL + + A T+ Sbjct: 125 LGMSRGQTLRRVILPQAARTAVAPLSNSFISLVKDTSLAATIQVPELFRQAQLITARTYE 184 Query: 186 PLPLYVAAAAIYWALSLCFEALQHRLEKKLGKAHQ 220 LY+AAAAIYW LS A Q RLE++ + + Sbjct: 185 IFTLYLAAAAIYWILSTILAAAQTRLERRAAEGRR 219 >STM1952 [E] COG0765 ABC-type amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 222 Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 145/219 (66%) Query: 2 LMEILELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVS 61 + E ++L+ ++ P L KG +TL ++ M GL+LGFVLA+ R+ P P+ W A Y+S Sbjct: 1 MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYIS 60 Query: 62 MMRGTPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQWN 121 + RGTPL+ Q+F++YYGLP GIE P+ A ++ LSLN AY SE+LR AI + +GQW Sbjct: 61 IFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAYTSETLRAAISAIDKGQWE 120 Query: 122 ASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIA 181 A+ S+G+T +QTLR I+PQA R+A+P +SN+ ISL+KDTSL + I V EL + + + Sbjct: 121 AAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS 180 Query: 182 VTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLGKAHQ 220 T +Y+AA+ IYW ++ ALQ+ E +L + + Sbjct: 181 RTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQER 219 >ZyecS [E] COG0765 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 222 Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 144/219 (65%) Query: 2 LMEILELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVS 61 + E ++L+ + P L KG GYTL ++ M GL+LGF+LA+ R+ P P+ W A Y+S Sbjct: 1 MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYIS 60 Query: 62 MMRGTPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQWN 121 + RGTPL+ Q+F++YYGLP GIE P+ + ++ LSLN AY +E+LR AI + +GQW Sbjct: 61 IFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYTAETLRAAISSIDKGQWE 120 Query: 122 ASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIA 181 A+ S+G+T +QT+R I+PQA R+A+P +SN+ ISL+KDTSL + I V EL + + + Sbjct: 121 AAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS 180 Query: 182 VTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLGKAHQ 220 T +Y+AA+ IYW ++ LQ+ E +L + + Sbjct: 181 RTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQER 219