BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1993.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02476 [R] COG3549 Plasmid maintenance system killer protein S...    92   3e-19
all2924 [R] COG3549 Plasmid maintenance system killer protein No...    76   2e-14
mlr1576 Non COG                                                        63   2e-10
SMc02461 [R] COG3549 Plasmid maintenance system killer protein S...    62   3e-10
VCA0391 [R] COG3549 Plasmid maintenance system killer protein Vc...    59   2e-09

>SMc02476 [R] COG3549 Plasmid maintenance system killer protein Sme
          Sinorhizobium meliloti
          Length = 92

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 3/95 (3%)

Query: 1  MIISFRCAETEALFHGETVARFANIRAAAERKLQMLEAAATLDFLRSPPGNRLEPLQGDR 60
          MI SF   ETEA+F  +   RF   +  A  KL ML AA  ++ LR PPGNRLE L+GDR
Sbjct: 1  MIQSFGNKETEAVFKRQRTRRFGAFQKPALVKLLMLHAATRIEDLRVPPGNRLEALKGDR 60

Query: 61 SGQYSIRINSQFRLCFIWNSIGEVGASHVEIVDYH 95
          +GQYSIRIN Q+R+CF + + G+  A  VEI DYH
Sbjct: 61 AGQYSIRINQQWRICFRFEN-GD--AYDVEISDYH 92


>all2924 [R] COG3549 Plasmid maintenance system killer protein Nos Nostoc
          sp. PCC 7120
          Length = 99

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 4  SFRCAETEALFHGETVARFANIRAAAERKLQMLEAAATLDFLRSPPGNRLEPLQGDRSGQ 63
           ++   TE    GE V  F +    A+++L +++AA   + L   P NR E L GDR GQ
Sbjct: 9  KYKDKRTEKFALGERVKEFQSFERQAQKRLDIIDAAPNKEVLMQLPSNRFESLGGDRKGQ 68

Query: 64 YSIRINSQFRLCFIWNSIGEVGASHVEIVDYH 95
          YSIRIN Q+R+CF W     +   ++EI DYH
Sbjct: 69 YSIRINEQWRICFNWPD-DFLKPFNIEITDYH 99


>mlr1576 Non COG
          Length = 98

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 1  MIISFRCAETEALFHGETVARFANIRAAAE----RKLQMLEAAATLDFLRSPPGNRLEPL 56
          MI+ FR     A F  +T +R  NI +  E    RKLQM++ A     LR PP N  E L
Sbjct: 1  MIVGFRDGWLRAFFVDDTRSR--NIPSDLESRLFRKLQMIDDATVDQDLRVPPSNHFEKL 58

Query: 57 QGDRSGQYSIRINSQFRLCFIWNSIGEVGASHVEIVDY 94
          +G+  G +SIR+N Q+RL F W+  G   AS + + D+
Sbjct: 59 RGNLEGFHSIRVNQQWRLIFRWDG-GRGEASDIYLDDH 95


>SMc02461 [R] COG3549 Plasmid maintenance system killer protein Sme
          Sinorhizobium meliloti
          Length = 98

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 1  MIISFRCAETEALFHGETVARFA--NIRAAAERKLQMLEAAATLDFLRSPPGNRLEPLQG 58
          MI+ FR       F  +  +R    ++ A   RKLQM++ AAT   LR PP N  E L+G
Sbjct: 1  MIVGFRDDWLRTFFVDDVRSRNIPYDLEARLFRKLQMIDDAATDQDLRVPPSNHFEKLRG 60

Query: 59 DRSGQYSIRINSQFRLCFIWNSI-GEVGASHVE 90
          + +G +SIR+N Q+RL F W+   GE    +++
Sbjct: 61 NLAGLHSIRVNQQWRLIFRWDGTRGEADGIYLD 93


>VCA0391 [R] COG3549 Plasmid maintenance system killer protein Vch Vibrio
           cholerae
          Length = 117

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 1   MIISFRCAETEALFHGETVARF--ANIRAAAERKLQMLEAAATLDFLRSPPGNRLEPLQG 58
           M + F+    E  +  +   R   ++I  A  RKL++L+AA     LR PPGNR E L+G
Sbjct: 23  MALEFKDKWLEQFYEDDKRHRLIPSSIENALFRKLEILDAAQAESDLRIPPGNRFEHLEG 82

Query: 59  DRSGQYSIRINSQFRLCFIW 78
           +  G  SIR+N Q+RL F W
Sbjct: 83  NLKGWCSIRVNKQYRLIFQW 102