BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1986.p         (242 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum               348   4e-96
PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa                342   4e-94
XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c               315   4e-86
HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae                311   6e-85
Zrph [J] COG0689 RNase PH EcZ Escherichia coli O157:H7 EDL933         306   2e-83

>RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum
          Length = 238

 Score =  348 bits (894), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 193/237 (81%)

Query: 6   RPSGRSVSQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
           RPSGR   QLR V LTR YT+HAEGSVLV FGDT VLCTAS+  KVP   KG G+GW+TA
Sbjct: 2   RPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVTA 61

Query: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
           EYGMLPRSTHTR DREAA+GKQSGRTQEIQRLIGRA+R+ FDL A GE T+ LDCDVLQA
Sbjct: 62  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQA 121

Query: 126 DGGTRTAAITGAMVAAYDAFTVLQSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLEDS 185
           DGGTRTA+ITGA VAA+DA +V++ +G +   P++ FVAA+SVGV  GVPVLDLDY ED+
Sbjct: 122 DGGTRTASITGAFVAAHDAISVMRKKGQLTGEPIRDFVAAVSVGVVDGVPVLDLDYPEDA 181

Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNSLLDLAQQGIATLNGLQKQALGL 242
            CDTDMN+VMT AG FVEVQGTAEG  F R  +++LL LA  GI TL GLQKQALGL
Sbjct: 182 SCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQALGL 238


>PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa
          Length = 239

 Score =  342 bits (878), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 166/237 (70%), Positives = 193/237 (81%)

Query: 4   FHRPSGRSVSQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWL 63
            +RPSGR+  QLR +R+TR YTKHAEGSVLVEFGDT+V+CT S E  VP FLKG+GQGWL
Sbjct: 1   MNRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWL 60

Query: 64  TAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVL 123
           TAEYGMLPRST  R  REA++GKQ GRT EIQRLIGR+LRAA DL   GE TL +DCDV+
Sbjct: 61  TAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVI 120

Query: 124 QADGGTRTAAITGAMVAAYDAFTVLQSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLE 183
           QADGGTRTA+ITGA VA  DA  VL+ RG ++  P+KQ VAA+SVG+YQGVPVLDLDYLE
Sbjct: 121 QADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNSLLDLAQQGIATLNGLQKQAL 240
           DS  +TD+NVVMTDAG F+EVQGTAEGA F  A LN++L+LAQQG+  L  LQ+ AL
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAAL 237


>XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c
          Length = 241

 Score =  315 bits (808), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/238 (65%), Positives = 184/238 (77%)

Query: 3   TFHRPSGRSVSQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGW 62
              RPSGR    LR VR+ R +T HAEGSVLV FG+T V+CTAS+E KVP FL+ KG+GW
Sbjct: 2   NVSRPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGW 61

Query: 63  LTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDV 122
           +TAEYGMLPRSTHTR +REAA+GKQ+GRT EIQRLIGRALR   D  A GERT+ LDCDV
Sbjct: 62  VTAEYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDV 121

Query: 123 LQADGGTRTAAITGAMVAAYDAFTVLQSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYL 182
           LQADGGTRTAAITGA VA  DA   L+ RG ++  P+   VAA+SVG+Y+G+PVLDLDY 
Sbjct: 122 LQADGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYP 181

Query: 183 EDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNSLLDLAQQGIATLNGLQKQAL 240
           EDSDCDTDMNVVM D G  +E+QGTAE  AF R  L+ LL LA++G A L  +Q++AL
Sbjct: 182 EDSDCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREAL 239


>HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae
          Length = 238

 Score =  311 bits (798), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 151/237 (63%), Positives = 184/237 (77%)

Query: 6   RPSGRSVSQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
           RP+ R  +Q R++++TR YTKHAEGSVLVEFGDT+VLCTA++E+ VP FLKG+GQGW+TA
Sbjct: 2   RPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTA 61

Query: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
           EYGMLPRSTH+RM REAAKGKQ GRT EIQRLI R+LRA  DL+A GER + LDCDV+QA
Sbjct: 62  EYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQA 121

Query: 126 DGGTRTAAITGAMVAAYDAFTVLQSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLEDS 185
           DGGTRTA+ITGA VA  DA   L   G ++T P+K  V+AISVG+  G  V DL+Y+EDS
Sbjct: 122 DGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDS 181

Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNSLLDLAQQGIATLNGLQKQALGL 242
             +TDMNVVM + G  +EVQGTAEG  F    L +LLDLA+QG   +   Q++ALGL
Sbjct: 182 AAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALGL 238


>Zrph [J] COG0689 RNase PH EcZ Escherichia coli O157:H7 EDL933
          Length = 238

 Score =  306 bits (785), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/235 (68%), Positives = 183/235 (77%)

Query: 6   RPSGRSVSQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
           RP+GRS +Q+R V LTR YTKHAEGSVLVEFGDT+VLCTASIEE VP FLKG+GQGW+TA
Sbjct: 2   RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61

Query: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
           EYGMLPRSTHTR  REAAKGKQ GRT EIQRLI RALRAA DL+A GE T+ LDCDVLQA
Sbjct: 62  EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121

Query: 126 DGGTRTAAITGAMVAAYDAFTVLQSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLEDS 185
           DGGTRTA+ITGA VA  DA   L   G ++T P+K  VAA+SVG+  G  V DL+Y+EDS
Sbjct: 122 DGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181

Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNSLLDLAQQGIATLNGLQKQAL 240
             +TDMNVVMT+ G  +EVQGTAEG  F    L +LL LA+ GI ++   QK AL
Sbjct: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAAL 236