BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1985.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2156 [S] COG1561 Uncharacterized stress-induced protein Rso R... 343 2e-94 NMB0711 [S] COG1561 Uncharacterized stress-induced protein Nme N... 220 3e-57 NMA0916 [S] COG1561 Uncharacterized stress-induced protein NmA N... 219 4e-57 XF1504 [S] COG1561 Uncharacterized stress-induced protein Xfa Xy... 210 3e-54 VC0209 [S] COG1561 Uncharacterized stress-induced protein Vch Vi... 209 5e-54 >RSc2156 [S] COG1561 Uncharacterized stress-induced protein Rso Ralstonia solanacearum Length = 311 Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 176/313 (56%), Positives = 227/313 (72%), Gaps = 14/313 (4%) Query: 3 IYSMTGYAVTTRET-----------TAGTVTLEMKSVNSRFLDLQFRVNDDLRAVEPMLR 51 I+SMTGY V TR+ TV++E ++VNSRFLDL FR ++ RA EP LR Sbjct: 2 IHSMTGYGVATRQAAFTDHSGAPCDNVATVSVEFRTVNSRFLDLLFRAPEECRAFEPALR 61 Query: 52 EAIMGRLVRGKVECRLSFGRKVASGNSQAINTSLVAQLASLQDQLRAQFPDAAPLSINEL 111 E +M L RGK+ECR++ R+ A+G+ A+N ++ QLA+L+ ++ P A L + E+ Sbjct: 62 EMLMSALSRGKLECRINLQRQEAAGDVAALNVGVLQQLATLEQEVARHLPAAGSLRMGEV 121 Query: 112 LRWPGVMEEAEISQETLQADILSTLQQTLDAFVESRAREGSALQAVILARVDAMEAIVAR 171 LRWPGV+ E E++Q+ L+ + + ++ L +ESR REG AL+A++L RVDAM +IV Sbjct: 122 LRWPGVLAEPELTQDALREAVTAAAKEALQQLLESRRREGEALKAMLLERVDAMLSIVED 181 Query: 172 ITPLVPQLVEQFQQKAIERMTEALGLALQTQNGAAPVATREESLERIRQEVTLYGIRIDI 231 + P+VP L++Q Q K ER+ EA GLA +G P TR+E ERIRQE T+YGIRIDI Sbjct: 182 LVPMVPNLIQQHQDKLTERLREAFGLA--APDG-TPALTRDELTERIRQEATVYGIRIDI 238 Query: 232 AEELARLSAHLAETRHILKKGGQVGKRLDFMMQELNREANTVGSKAAVKELADASMELKL 291 AEEL+RL AHL ETRHIL+KGGQ+GKRLDFMMQELNREANT+GSKAA KELADASMELKL Sbjct: 239 AEELSRLQAHLRETRHILEKGGQIGKRLDFMMQELNREANTLGSKAAAKELADASMELKL 298 Query: 292 LIDQMREQVQNLE 304 LI+QMREQVQNLE Sbjct: 299 LIEQMREQVQNLE 311 >NMB0711 [S] COG1561 Uncharacterized stress-induced protein Nme Neisseria meningitidis MC58 Length = 294 Score = 220 bits (561), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 180/305 (59%), Gaps = 17/305 (5%) Query: 1 LTIYSMTGYAVTTRETTAGTVTLEMKSVNSRFLDLQFRVNDDLRAVEPMLREAIMGRLVR 60 + I+SMTG+A E + + L++++VN RFLD+Q R+ DDLR +E +RE I + R Sbjct: 6 IHIHSMTGFANAAAECGSKRINLDLRAVNHRFLDIQIRMPDDLRYLESGIREKISSHIAR 65 Query: 61 GKVECRLSFGRKVASGNSQAINTSLVAQLASLQDQLRAQFPDAAPLSINELLRWPGVMEE 120 GKVEC++ S +N LV QLA + LR + D A L + ++LR+PGV+ Sbjct: 66 GKVECKIQIQDAENGSQSLELNRDLVGQLAEINKDLR-KHHDLAKLGVADILRFPGVLAS 124 Query: 121 AEISQETLQADILSTLQQTLDAFVESRAREGSALQAVILARVDAMEAIVARITPLVPQLV 180 + E L I ++ L F +R REG L +L R++AME I+ ++ L P L+ Sbjct: 125 QRENTEELAKSITELTEKALKDFTAARKREGKKLGEHLLQRLEAMEEIIDALSELFPTLL 184 Query: 181 EQFQQKAIERMTEALGLALQTQNGAAPVATREESLERIRQEVTLYGIRIDIAEELARLSA 240 E ++K R+ EA+G N +R++QE L+ + DI EE +RL Sbjct: 185 ETHKEKIRARLVEAVG---SIDN------------DRLQQEFALFIQKSDIDEEFSRLRT 229 Query: 241 HLAETRHIL-KKGGQVGKRLDFMMQELNREANTVGSKAAVKELADASMELKLLIDQMREQ 299 H+AE R I+ + G GKRLDF+MQELNREANT+GSK+ E AS+ELK+LI+QMREQ Sbjct: 230 HIAEVRRIVTEHKGSSGKRLDFLMQELNREANTLGSKSIAAECTQASVELKVLIEQMREQ 289 Query: 300 VQNLE 304 VQN+E Sbjct: 290 VQNIE 294 >NMA0916 [S] COG1561 Uncharacterized stress-induced protein NmA Neisseria meningitidis Z2491 Length = 294 Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 183/305 (60%), Gaps = 17/305 (5%) Query: 1 LTIYSMTGYAVTTRETTAGTVTLEMKSVNSRFLDLQFRVNDDLRAVEPMLREAIMGRLVR 60 + I+SMTG+A E + + L++++VN RFLD+Q R+ DDLR +E +RE I + R Sbjct: 6 IHIHSMTGFANAAAECGSKRINLDIRAVNHRFLDIQIRMPDDLRYLESGIREKISSHIAR 65 Query: 61 GKVECRLSFGRKVASGNSQAINTSLVAQLASLQDQLRAQFPDAAPLSINELLRWPGVMEE 120 GKVEC++ S S +N+ LV QLA + LR + D A L + ++LR+PGV+ Sbjct: 66 GKVECKIQIQDTENSRQSLELNSDLVNQLAEINKNLR-KHHDLAKLGVADILRFPGVLAS 124 Query: 121 AEISQETLQADILSTLQQTLDAFVESRAREGSALQAVILARVDAMEAIVARITPLVPQLV 180 + E L I ++ L F +R REG L +L R+++ME I+ ++ L P L+ Sbjct: 125 QRENTEELAKSITELTEKALKDFTAARRREGKKLGEHLLQRLESMEEIIDALSELFPTLL 184 Query: 181 EQFQQKAIERMTEALGLALQTQNGAAPVATREESLERIRQEVTLYGIRIDIAEELARLSA 240 E ++K R+ EA+G + + +R++QE L+ + DI EE +RL Sbjct: 185 ETHKEKIRARLVEAVG---------------DINNDRLQQEFALFIQKSDIDEEFSRLRT 229 Query: 241 HLAETRHIL-KKGGQVGKRLDFMMQELNREANTVGSKAAVKELADASMELKLLIDQMREQ 299 H+AE R I+ + G GKRLDF+MQELNREANT+GSK+ E AS+ELK+LI+QMREQ Sbjct: 230 HIAEVRRIVTEHKGSSGKRLDFLMQELNREANTLGSKSIAAECTQASVELKVLIEQMREQ 289 Query: 300 VQNLE 304 VQN+E Sbjct: 290 VQNIE 294 >XF1504 [S] COG1561 Uncharacterized stress-induced protein Xfa Xylella fastidiosa 9a5c Length = 300 Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 183/302 (60%), Gaps = 16/302 (5%) Query: 3 IYSMTGYAVTTRETTAGTVTLEMKSVNSRFLDLQFRVNDDLRAVEPMLREAIMGRLVRGK 62 I+SMT +A T G + E++SVN RFLD+ R+ ++LRA+EP LRE + R+ RGK Sbjct: 15 IHSMTAFAADEHLTPWGLLACELRSVNHRFLDIVIRLPEELRALEPQLRERVAARVSRGK 74 Query: 63 VECRLSFGRKVASGNSQAINTSLVAQLASLQDQLRAQFPDAAPLSINELLRWPGVMEEAE 122 ++ + + +N L++QL++L +L AQFP A ++ ELL+ PGV++ + Sbjct: 75 LDLTVRLSPQEIHTGKLVVNELLLSQLSTLALRLSAQFP-ALRVTFAELLQIPGVLKGEQ 133 Query: 123 ISQETLQADILSTLQQTLDAFVESRAREGSALQAVILARVDAMEAIVARITPLVPQLVEQ 182 I TLQ ++ L + L+ F+ +R REG +QA+I R A+E IV + L+P + E Sbjct: 134 IDMATLQGHAVALLDKVLNNFIATREREGLKMQAMIAQRASAIERIVGEVRILIPTIREG 193 Query: 183 FQQKAIERMTEALGLALQTQNGAAPVATREESLERIRQEVTLYGIRIDIAEELARLSAHL 242 K RM L+ G RI QE+ L+ ++D+ EEL RLS+H+ Sbjct: 194 QHNKLSARMNH---LSYPVDPG------------RIEQELVLWLQKLDVDEELDRLSSHI 238 Query: 243 AETRHILKKGGQVGKRLDFMMQELNREANTVGSKAAVKELADASMELKLLIDQMREQVQN 302 +E IL++ VG+RLDF+MQE NREANT+GSK+ ++A++ELK+LIDQ+REQVQN Sbjct: 239 SELHRILQQREPVGRRLDFLMQEFNREANTLGSKSVDSRTSNATIELKVLIDQIREQVQN 298 Query: 303 LE 304 +E Sbjct: 299 IE 300 >VC0209 [S] COG1561 Uncharacterized stress-induced protein Vch Vibrio cholerae Length = 288 Score = 209 bits (533), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 177/302 (58%), Gaps = 15/302 (4%) Query: 3 IYSMTGYAVTTRETTAGTVTLEMKSVNSRFLDLQFRVNDDLRAVEPMLREAIMGRLVRGK 62 IYSMT YA + G+ E++SVN R+L+ FR+ + R +EP+LRE RL RGK Sbjct: 2 IYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRGLEPLLRERFRQRLSRGK 61 Query: 63 VECRLSFGRKVASGNSQAINTSLVAQLASLQDQLRAQFPDAAPLSINELLRWPGVMEEAE 122 +EC L F A+ + IN L Q+ + +Q+ + + ++ ++++WPGVME E Sbjct: 62 IECHLRFEANPAAQSHLTINEGLAQQVINAANQIMHMTGELSRINPFQVMQWPGVMETPE 121 Query: 123 ISQETLQADILSTLQQTLDAFVESRAREGSALQAVILARVDAMEAIVARITPLVPQLVEQ 182 + + +LS + +D F+ +R REG ++A+I R+ A+ A V ++ +P+++E Sbjct: 122 QDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQRLQAISAEVVKVRARMPEILEW 181 Query: 183 FQQKAIERMTEALGLALQTQNGAAPVATREESLERIRQEVTLYGIRIDIAEELARLSAHL 242 +++ + E A E R+ QE+ L + D+AEEL RL +H+ Sbjct: 182 QRERLFSKFEE---------------AKIELDASRVEQELILLAQKSDVAEELDRLDSHV 226 Query: 243 AETRHILKKGGQVGKRLDFMMQELNREANTVGSKAAVKELADASMELKLLIDQMREQVQN 302 E R +LKKGG G++LDFMMQE NRE+NT+ SK+ ++ + +ELK+LI+QMREQ+QN Sbjct: 227 KEAREVLKKGGSCGRKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQN 286 Query: 303 LE 304 +E Sbjct: 287 IE 288