BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1961.p (499 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 453 e-127 RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 269 1e-71 RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 238 4e-62 PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 234 4e-61 VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae 216 1e-55 >PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 496 Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust. Identities = 243/474 (51%), Positives = 327/474 (68%), Gaps = 1/474 (0%) Query: 12 VTVIALSLTMAGCADQGGIKPQAQVRDVAVLDAGQAIRQTASEAGWPQRTWWQVYGDTQL 71 V + + ++GC G I P+A D L AI+ A EAGWPQ WW+VY D QL Sbjct: 6 VGFLVVFSAISGCVSTGDIAPEAATLDANALATDHAIQAAAREAGWPQAQWWKVYADPQL 65 Query: 72 DQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRKDWSDNVYYGAAF 131 D +++A+ GNP +AVA ARVRQA+SMA + + E P + ++ R W D+ +YG Sbjct: 66 DAWIEKALDGNPGLAVAHARVRQAKSMAGLVESIESPQIEGKGSLVRHRWPDDYFYGPGD 125 Query: 132 RDKLT-WNNTATLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQLDLEGNVVRTYVQ 190 + T WNN+ +GL+Y +DLW R+++ + RA D H AA+AR AQL+LEGN+VR YVQ Sbjct: 126 LARTTSWNNSTEIGLNYKLDLWGRDRSDSERAVDLAHMAAAEARQAQLELEGNIVRAYVQ 185 Query: 191 LALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLPETRRQIEALQENI 250 L+LQY +D +AML++++ IL LA+RR GG+GT +++QAE PLPET R+IE + E I Sbjct: 186 LSLQYAEMDIAKAMLQQQRDILALAQRRLRGGIGTHFEVSQAEVPLPETERRIEVIDEEI 245 Query: 251 ALIRNQLAALLGEGPGAADGVTRPGMALHTAIGLPSALPADLVGRRPDISAARWRVEAAA 310 L RN LAAL G+GPG + RP + L LPSALPA+L+GRRPD+ A RW+V A A Sbjct: 246 QLTRNLLAALAGKGPGEGRTIRRPSLNLAAQPSLPSALPAELLGRRPDVVARRWQVAALA 305 Query: 311 KGISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLRGQL 370 KG+ VA+A FYPN++L+A +G +A GGG+ F + + GPA++LPIF+GGRLR QL Sbjct: 306 KGVDVARADFYPNVDLMASVGFSAVGGGMLEFFRSAKYTYSAGPAVTLPIFDGGRLRSQL 365 Query: 371 GAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQAQESVRAAQKSVDIATRAY 430 G A+AGYD VE YN L ALK ISDQ++ L SV Q+ A +SV +AQK+ DIAT AY Sbjct: 366 GEAAAGYDAAVEQYNQTLVDALKNISDQLIRLHSVDIQKDFAAQSVASAQKTYDIATLAY 425 Query: 431 QRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGGMDNGPETPS 484 QRGLTDYLNVL+AQT+ +QQ + +Q+QA RLAA+A+L TALGGG+ G +TP+ Sbjct: 426 QRGLTDYLNVLNAQTRLFQQQLVQEQVQAARLAAHASLLTALGGGVGAGADTPA 479 >RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 489 Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 164/429 (38%), Positives = 245/429 (57%), Gaps = 4/429 (0%) Query: 49 RQTASEAG-WPQRTWWQVYGDTQLDQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGEL 107 R S+ G WP + W + D QL LV A+ +P++ VA ARVR +++MA A Sbjct: 36 RTLPSQGGQWPSQNWVDQFNDPQLRALVDEAIHDSPNLQVAFARVRASRAMADAARGDLY 95 Query: 108 PNAQLDVAVGRKDWSD-NVYYGAAFRDKLTWNNTATLGLSYNVDLWDRNKNTTLRAQDEM 166 P+ LD + R+ +S +++ G + LG+SY++D W +N+ A + Sbjct: 96 PSVGLDAEMTRQRFSSYDLFEGTPLGGNWVTESKIQLGVSYDLDFWGKNRAALESALSDD 155 Query: 167 HAVAADARAAQLDLEGNVVRTYVQLALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQ 226 A+ A+++A++L L +V RTYV+LA Y D E + + ++++ L+ +R GL TQ Sbjct: 156 KAMEAESQASRLMLSTSVARTYVKLAALYAQRDVAERTIAQRRELVSLSGQRLRAGLDTQ 215 Query: 227 LDITQAEAPLPETRRQIEALQENIALIRNQLAALLGEGPGAADGVTRPGMALHTAIGLPS 286 ++ TQA A + + ++E + E IAL RNQLAALLG+GP + RP + LP Sbjct: 216 VETTQARANIAAAQTELEQVDEQIALARNQLAALLGKGPDRGLAIARPTLLAQPTPKLPD 275 Query: 287 ALPADLVGRRPDISAARWRVEAAAKGISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAP 346 L DL+GRRPD+ AARWRVEA AK I VAKA F P+++L A +G A+ + L Sbjct: 276 HLSIDLIGRRPDLVAARWRVEATAKDIDVAKAQFLPDISLTAFLGLASIAPE--NLLLGN 333 Query: 347 NLQTTYGPAISLPIFEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVA 406 Q GPA+ LPIFEGG+LR L AGYD V YN L++AL +DQ+ +L S+ Sbjct: 334 ARQLGIGPALRLPIFEGGKLRANLRGKYAGYDAAVASYNQTLTEALHDTADQITSLHSID 393 Query: 407 RQQQQAQESVRAAQKSVDIATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYA 466 Q + ++ A+++ +A Y GL L VL+A++ L+Q+++ LQA+RL A Sbjct: 394 TQIDIQRTALAEAERAYSLARTRYGAGLGTQLTVLNAESTVLQQRRLAALLQARRLDAQM 453 Query: 467 ALQTALGGG 475 AL ALGGG Sbjct: 454 ALIKALGGG 462 >RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 475 Score = 238 bits (606), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 247/471 (52%), Gaps = 20/471 (4%) Query: 9 LPAVTVIALSLTMAGCADQGGIKPQAQVRDVAVLDAG--QAIRQTASEAGWPQRTWWQVY 66 L A V+ L+L CA P+A R G A AS WP WWQ Y Sbjct: 15 LRAGVVLPLALVAGACAQ----FPEASERPTPQTPEGLHSASSLAASAVAWPDDHWWQAY 70 Query: 67 GDTQLDQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRKDWSDNVY 126 GD QL+ L+ A+ +P MA AAAR+R A++ VA A LP + + R+ S + Sbjct: 71 GDAQLNALIGEALRDSPDMAAAAARLRGAEAAGAVAGAALLPQVSANASAARQRQSGSS- 129 Query: 127 YGAAFRDKLTWNNT--ATLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQLDLEGNV 184 WN ATL S+ +D W RN+ + A ++ A ADA A+L L + Sbjct: 130 ---------DWNEVGRATLDFSWEIDFWGRNRASLAAATSDLEASRADAAQARLTLASAI 180 Query: 185 VRTYVQLALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLPETRRQIE 244 +Y LA Y + D EA L + L RF GL T+ + QAEA L ++ Sbjct: 181 ASSYADLAGLYAVRDADEAALAVRRHSAQLFTERFASGLETRSGVKQAEALLASAEGELL 240 Query: 245 ALQENIALIRNQLAALLGEGPGAADGVTRPGMALHTAIGLPSALPADLVGRRPDISAARW 304 + E+I L R+ LAAL+G GP + RP +A+ + GLP+ L +L+GRRPD+ AAR Sbjct: 241 RVDESIGLTRHALAALVGAGPDRGLTIRRPSVAIRSPEGLPAELAVNLLGRRPDVVAARL 300 Query: 305 RVEAAAKGISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGG 364 + EA I +A FYPN+NL A IG + GL + + + + GPA+SLPIF GG Sbjct: 301 QAEAQVHRIDSKRAEFYPNVNLSAFIGFESI--GLSNLFKSGSRIGSIGPAVSLPIFNGG 358 Query: 365 RLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQAQESVRAAQKSVD 424 RLRG+L A A YD V +YN L+QAL+ ++D ++ +++A + + +E+ RAA+++ Sbjct: 359 RLRGELKRAQASYDEAVANYNRTLTQALQDVADAWLSRKALAPRLAKVEEAFRAAEQAYR 418 Query: 425 IATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGG 475 + Y+ GL YL VL AQ L Q+ + LQ++ A+ ALGGG Sbjct: 419 VTLNRYEGGLASYLEVLTAQDTLLTNQRALTDLQSRAFTLDVAMTRALGGG 469 >PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 492 Score = 234 bits (596), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 164/455 (36%), Positives = 244/455 (53%), Gaps = 4/455 (0%) Query: 23 GCADQGGIKPQAQVRDVAVLDAGQAIRQTA-SEAGWPQRTWWQVYGDTQLDQLVKRAVAG 81 GC G++P A+++ L AG+++ A S A WP++ WW GD QLDQL+ A+ G Sbjct: 24 GCVTSEGLEPNARLQPAGALQAGRSLDGVALSPAAWPRQDWWTGLGDRQLDQLIGEALQG 83 Query: 82 NPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRKDWSDNVYYGAAFRDKLTWNNTA 141 P + +A AR RQA + A A P + +V A + + Sbjct: 84 TPDLQIAEARARQAAATAQAQDAARQPTLDAKASYSGIRAPTSVA-PAPLGGRYSAIKYL 142 Query: 142 TLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQLDLEGNVVRTYVQLALQYGLLDNT 201 +LG +Y+ DLW + A + +A D++AA++ L ++ R Y LA + + D Sbjct: 143 SLGFNYDFDLWGGERAAWEAALGQANAARIDSQAARIGLSASIARAYSDLAHAFTVRDLA 202 Query: 202 EAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLPETRRQIEALQENIALIRNQLAALL 261 E LK Q++ +L+++R + GL +++ + Q + L R+Q+ A +++IA R LA LL Sbjct: 203 EEELKRSQRMTELSQKRMSAGLDSKVQLQQTQTQLATARQQLSAAEQDIASARIALAVLL 262 Query: 262 GEGPGAADGVTRPGMALHTAIGLPSALPADLVGRRPDISAARWRVEAAAKGISVAKAAFY 321 G+GP + RP ++ LPS LPA+L+GRR DI AARWRVEAA + I AK FY Sbjct: 263 GKGPDRGLELQRPQPLNPASLSLPSVLPAELLGRRADIVAARWRVEAARRNIDSAKTEFY 322 Query: 322 PNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLRGQLGAASAGYDIEV 381 PNLNL A G AA L AP+ PAISLPIF+GGR R L A YD+ V Sbjct: 323 PNLNLGAMAGLAALHTS--DVLQAPSRFFQVAPAISLPIFDGGRRRANLAERDADYDLAV 380 Query: 382 EHYNALLSQALKGISDQVVTLQSVARQQQQAQESVRAAQKSVDIATRAYQRGLTDYLNVL 441 YN L QAL +SD + L+S+ +Q +++ A+ + D+A R Y G+ YL+ L Sbjct: 381 GQYNKTLVQALGEVSDDLGKLRSLEQQVIDQRQARDIARSNFDLAMRRYGEGVGSYLDAL 440 Query: 442 HAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGGM 476 Q Q L ++ + L++Q++ L ALGGG Sbjct: 441 SVQQQLLVAERQLASLESQQIDLSVQLVQALGGGF 475 >VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae Length = 484 Score = 216 bits (550), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 164/471 (34%), Positives = 250/471 (53%), Gaps = 9/471 (1%) Query: 10 PAVTVIALS-LTMAGCADQGGIKPQAQVRDVAVLDAGQAIRQTASEAGWPQRTWWQVYGD 68 P T LS + GC+ A + + L + A E WP WWQ Y D Sbjct: 16 PYFTASLLSAFVLTGCSVPDHYPDLATMWEANELSSTNTFSHQA-EMDWPSANWWQRYQD 74 Query: 69 TQLDQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRKDWSDNVYYG 128 QL+ L++ A+ +PS+ +A AR++ AQ A AG + + L +A + + Y Sbjct: 75 AQLNHLIEEALQHSPSLEMAMARLKGAQGFA--RQAGAIRSFDLGLAASATESKVSERYQ 132 Query: 129 AAFRDKLTWNN--TATLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQLDLEGNVVR 186 +A WN+ T TL Y+ D W +N+ + A E+ A A++ AA+L + ++ Sbjct: 133 SATPPD-GWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIAN 191 Query: 187 TYVQLALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLPETRRQIEAL 246 Y +LA Y + A L+ K ++L +R+ GL T ++QA+A ++ + Sbjct: 192 AYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGI 251 Query: 247 QENIALIRNQLAALLGEGPGAADGVTRPGMALHTAIGLPSALPADLVGRRPDISAARWRV 306 QE+I L +N LAAL+G+GP A + P + L + GLPS L+G R DI+AARWR Sbjct: 252 QESIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRA 311 Query: 307 EAAAKGISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRL 366 EAAA+ + +A+A FYP++ L A IG A GL + N GPAI LP+F GGRL Sbjct: 312 EAAAQQVGIAQAQFYPDVTLSAFIGYQAF--GLDHLFDSGNDAGAIGPAIYLPLFTGGRL 369 Query: 367 RGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQAQESVRAAQKSVDIA 426 GQL +A A Y V YN L QAL ++D V + Q++ + + +++V+ A++++ IA Sbjct: 370 EGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIA 429 Query: 427 TRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGGMD 477 T YQ GL YL+VL A+ L Q+ + LQ++ + AL ALGGG + Sbjct: 430 TNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFE 480