BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1956.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1968 [K] COG1396 Predicted transcriptional regulators Vch Vibr...    41   5e-04
FN0555 [K] COG1396 Predicted transcriptional regulators Fnu Fuso...    41   5e-04
AGl1270 [K] COG1396 Predicted transcriptional regulators Atu Agr...    40   0.001
PAE3208 [K] COG1396 Predicted transcriptional regulators Pya Pyr...    40   0.002
SMc02620 [K] COG1396 Predicted transcriptional regulators Sme Si...    39   0.003

>VC1968 [K] COG1396 Predicted transcriptional regulators Vch Vibrio
          cholerae
          Length = 181

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 36 VRKIRTTLRLTIAEYAKLCGVSARTLQDIERGESSPTLATAEKLLKPVGMSVGAVARKRP 95
          ++ +R +  L++   A+L GVS   L  IERGESSPT+AT  K+   +  S  A     P
Sbjct: 14 LKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDP 73


>FN0555 [K] COG1396 Predicted transcriptional regulators Fnu
          Fusobacterium nucleatum
          Length = 199

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 22 DELAANPTLPVPAVVRKIRTTLRLTIAEYAKLCGVSARTLQDIERGESSPTLATAEKL 79
          D +  N  + V   ++ IR + +L + + A  CG+S+  L  IE+G ++P+L T + +
Sbjct: 11 DNIKMNKEINVGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSI 68


>AGl1270 [K] COG1396 Predicted transcriptional regulators Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 226

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%)

Query: 27 NPTLPVPAVVRKIRTTLRLTIAEYAKLCGVSARTLQDIERGESSPTLATAEKLLKPVGMS 86
          N  + +   VR  R  L +T+ + A   GVS   L  IE G  SP+L T + L K +G+ 
Sbjct: 33 NLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGVP 92

Query: 87 VGAVAR 92
          + A  R
Sbjct: 93 ITAFFR 98


>PAE3208 [K] COG1396 Predicted transcriptional regulators Pya Pyrobaculum
          aerophilum
          Length = 516

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 36 VRKIRTTLRLTIAEYAKLCGVSARTLQDIERGESSPTLATAEKLLKPVGMSVG 88
          + ++R    L++   AKL GVS  TL  IERGE  PT++T   +   +G++ G
Sbjct: 9  IAELREKRGLSLTALAKLSGVSKSTLWGIERGEVVPTVSTLWNIANALGVTFG 61


>SMc02620 [K] COG1396 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 243

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 36  VRKIRTTLRLTIAEYAKLCGVSARTLQDIERGESSPTLATAEKLLKPVGMSVGAVARK 93
           VR  R  L +T+A+ A    +S   L  IE G +SP+L T + L + +G+ + A  R+
Sbjct: 60  VRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSLTTLQTLSRALGVPITAFFRR 117