BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1951.p         (214 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc4253 [QR] COG0500 SAM-dependent methyltransferases Atu Agroba...    65   1e-10
VC0813 [QR] COG0500 SAM-dependent methyltransferases Vch Vibrio ...    62   9e-10
CC1925 [QR] COG0500 SAM-dependent methyltransferases Ccr Cauloba...    60   3e-09
PAB1765 [QR] COG0500 SAM-dependent methyltransferases Pab Pyroco...    59   8e-09
RSc3026 [QR] COG0500 SAM-dependent methyltransferases Rso Ralsto...    58   1e-08

>AGc4253 [QR] COG0500 SAM-dependent methyltransferases Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 198

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 10  DTIAHYGSHAESFRQGTWEHDVSQNMAALLESLSARAGQAGQGPFTVLDLGCGPGRDLLE 69
           +TIA Y  HA ++       D        LE+  AR     +    +L+LGCG G+D   
Sbjct: 7   ETIAFYSGHATAYTSRGQAPDRPH-----LETFLARLRAGAK----ILELGCGGGQDSEY 57

Query: 70  FTRRGHVAVGLDGTAEFVEMARAASGCEVLHQDFLQLDLPLQRFDGIFANASLFHVPSAE 129
               G      DGT +  + A+A  G  V    F  ++     +D ++ANA L HVP   
Sbjct: 58  MLSAGFDVHPTDGTPDIAKAAQARLGIPVRTLLFENIE-DAALYDAVWANACLLHVPRLA 116

Query: 130 LPRVLGQLRASLKPGGILFSSNPRGADLEG 159
           LP ++G++  +LKPGG+ ++S   G ++EG
Sbjct: 117 LPGIIGRIHTALKPGGVFYASFKAG-EVEG 145


>VC0813 [QR] COG0500 SAM-dependent methyltransferases Vch Vibrio cholerae
          Length = 192

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 63/155 (40%), Gaps = 9/155 (5%)

Query: 11  TIAHYGSHAESFRQGTWEHDVSQNMAALLESLSARAGQAGQGPFTVLDLGCGPGRDLLEF 70
           ++  Y  +A+ F   T E D +    +LL+       Q G     VLD GCG GRD   F
Sbjct: 2   SVEFYNQNAQQFFSSTVEVDST----SLLDQFVPYLPQGG----LVLDAGCGSGRDSKRF 53

Query: 71  TRRGHVAVGLDGTAEFVEMARAASGCEVLHQDFLQLDLPLQRFDGIFANASLFHVPSAEL 130
              G+     D +A    +A       V    F       +R+DGI+A ASL HV    L
Sbjct: 54  LDMGYQIDAFDASAPLAALAEELLNQSVTVTTFENFTSS-KRYDGIWACASLLHVTRESL 112

Query: 131 PRVLGQLRASLKPGGILFSSNPRGADLEGWSGPRY 165
           P     L   LK GG  + S   G D     G R+
Sbjct: 113 PETFAHLAKMLKCGGAFYCSFKYGQDEVERDGRRF 147


>CC1925 [QR] COG0500 SAM-dependent methyltransferases Ccr Caulobacter
           vibrioides
          Length = 209

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 56  VLDLGCGPGRDLLEFTRRGHVAVGLDGTAEFVEMARAASGCEVLHQDFLQLDLPLQRFDG 115
           +L+LGCG GRD    +  G +    DG     + A       V    F QLD     +DG
Sbjct: 53  ILELGCGDGRDSEAMSVLGFLIDPTDGVEAMAKQAEGRLKRPVRVMRFDQLDAQ-GAYDG 111

Query: 116 IFANASLFHVPSAELPRVLGQLRASLKPGGILFSSNPRGADLEG 159
           ++ANASL HVP + LP VL ++  +LKPGG+  ++   G ++EG
Sbjct: 112 VWANASLLHVPGSALPDVLSRIFRALKPGGLHMATYKAG-EIEG 154


>PAB1765 [QR] COG0500 SAM-dependent methyltransferases Pab Pyrococcus abyssi
          Length = 248

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 27/159 (16%)

Query: 56  VLDLGCGPGRDLLEFTRRGHVAVGLDGTAEFVEMARAASGCEVLHQDFLQ---LDLPL-Q 111
           +LDL CG G   LE  +RG+  +GLD   E +++AR  S  E +  +F+Q   L++   +
Sbjct: 45  ILDLACGTGTPTLELAKRGYEVIGLDLHEEMLQVARRKSEKEGIKVEFIQGNALEIDFEE 104

Query: 112 RFDGI-FANASLFHVPSAELPRVLGQLRASLKPGGILFSSNPRGADLEGW--SGPRY-GV 167
            FD I    +S+ +     + ++   ++ +LKPGGI        AD   W  SG  Y  +
Sbjct: 105 EFDAITMFFSSITYFDDYSIQQLFNSIKQALKPGGIFV------ADFPCWFYSGKDYPII 158

Query: 168 WHSLEG--------WRGYLEPA----GFIELRHYYRPDG 194
           W    G        WR  +EPA     F  L    +PDG
Sbjct: 159 WDEQNGDERLVITDWRE-IEPAFQKMRFKRLVQIIKPDG 196


>RSc3026 [QR] COG0500 SAM-dependent methyltransferases Rso Ralstonia
           solanacearum
          Length = 196

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 11  TIAHYGSHAESFRQGTWEHDVSQNMAALLESLSARAGQAGQGPFTVLDLGCGPGRDLLEF 70
           T+A Y + AE+F +   E     ++ ALL  +    G         +D+GCG GR++   
Sbjct: 5   TVAAYDTLAETFAREWREQPAPDDLYALLRRMFKAGGD-------TVDIGCGAGREVAWL 57

Query: 71  TRRGHVAVGLDGTAEFVEMARAASGCEVLHQDFLQ--LDLPLQRFDGIFANASLFHVPSA 128
              G+ AVG D +A  +E AR         +  L   + +    FD +     + H+P A
Sbjct: 58  NANGYPAVGYDASAGLLEAARTQYPGLSFRRAMLPELVGIAEGAFDNVVCETVIMHLPPA 117

Query: 129 ELPRVLGQLRASLKPGGILFSS 150
           ++   + +L A L+PGG L+ S
Sbjct: 118 QIGAAVRRLLALLRPGGTLYLS 139