BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1942.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1323 [GER] COG0697 Permeases of the drug/metabolite transport...   156   1e-38
BMEII0439 [GER] COG0697 Permeases of the drug/metabolite transpo...    66   2e-11
mll1264 [GER] COG0697 Permeases of the drug/metabolite transport...    64   8e-11
slr0521 [GER] COG0697 Permeases of the drug/metabolite transport...    51   5e-07
mll9408 [P] COG2076 Membrane transporters of cations and cationi...    44   8e-05

>RSc1323 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 123

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 98/123 (79%)

Query: 1   MNLTTFGFIFIGICLNAVAQLLLKAGTNAVGAIHLTTENWFSTGIKLATQLPIIGGLSCY 60
           MNL TFG I  G+ LNA AQLLLKAG NA+G    + EN    GIKLATQLPIIGGL+CY
Sbjct: 1   MNLVTFGLILTGVMLNACAQLLLKAGVNAIGRFAFSVENIVPIGIKLATQLPIIGGLACY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLVAIGVIIVGVVLL 120
           VISV VWI+GLSRVDVTIAYP+LSLGY++NAI AWY  GE +SLQRL+ I +I++GV +L
Sbjct: 61  VISVVVWILGLSRVDVTIAYPMLSLGYVVNAILAWYLFGEVLSLQRLIGITIILIGVFVL 120

Query: 121 TRS 123
            RS
Sbjct: 121 ARS 123


>BMEII0439 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Bme Brucella melitensis
          Length = 159

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 60/116 (51%)

Query: 8   FIFIGICLNAVAQLLLKAGTNAVGAIHLTTENWFSTGIKLATQLPIIGGLSCYVISVGVW 67
           FI   +  NA AQL+LK G   +G I  + +       ++     +  GL  +VIS+   
Sbjct: 26  FILFTVMTNAAAQLMLKYGMITLGPISFSADTLIQRIFQIVFNPWVFAGLFTFVISMASH 85

Query: 68  IIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLVAIGVIIVGVVLLTRS 123
           +  LS+VD++ AYP LSL Y+  A+ AW    E +   ++  I  I +G +L+ +S
Sbjct: 86  LYVLSKVDLSFAYPFLSLAYVAVALCAWLLFKEELGAYKIAGIAFICIGTILIAQS 141


>mll1264 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Mlo Mesorhizobium loti
          Length = 149

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%)

Query: 8   FIFIGICLNAVAQLLLKAGTNAVGAIHLTTENWFSTGIKLATQLPIIGGLSCYVISVGVW 67
           FI   +  NA AQL+LK G  ++G I     N     +++     +  GL  +VIS+   
Sbjct: 11  FILFTVMTNAAAQLMLKQGMMSLGPISFEGVNPLFKLLQIVFSPWVFLGLCTFVISMASH 70

Query: 68  IIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLVAIGVIIVGVVLLTRS 123
           +  LS+V+++ AYP LSL Y+  AI A++   E I+  R+  I  I VG VL+ +S
Sbjct: 71  LYVLSKVELSFAYPFLSLAYVAVAIFAYFVFREDINGWRIAGIAFICVGTVLIAQS 126


>slr0521 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Syn Synechocystis
          Length = 337

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 9   IFIGICLNAVAQLLLKAGTNAVGAIHLTTENWFSTGI-KLATQLPIIGGLSCYVISVGVW 67
           I I I  ++   +L+  G   +G + L +       I ++ +   ++GG+ C  IS   +
Sbjct: 209 ILILIFTDSAGDVLIARGMKQIGPVRLQSPLKMVKLIGRILSHPSVLGGIGCQTISFVTF 268

Query: 68  IIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLVAIGVIIVGVVLL 120
           I  LS  D+++  P  +LGY+++ +GA + L E I L R + IGVI  GV L+
Sbjct: 269 ISLLSWTDISLIRPAGALGYVMSLLGAKFLLKETIPLARWLGIGVITAGVALI 321



 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 5   TFGFIFIGICLNAVAQLLLKAGTNAVGAIH-LTTENWFSTGIKLATQLPIIGGLSCYVIS 63
           T G +   +    +  + L  G    GA+   +    ++  + L T   I+ G+   + +
Sbjct: 43  TIGLLLTMVTTQVLGDIWLSRGMKVFGAVEDYSLAGLWTLFLYLLTSPWIVVGVITLLFA 102

Query: 64  VGVWIIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLVAIGVIIVGV 117
           + ++    SR+D+++  PL S  YI+NA+ AW  LGE +S  R +A  +I  GV
Sbjct: 103 LFLYFTATSRLDLSLVLPLFSSSYILNALLAWLILGEEVSFYRWLATFMIASGV 156


>mll9408 [P] COG2076 Membrane transporters of cations and cationic drugs Mlo
           Mesorhizobium loti
          Length = 117

 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 54  IGGLSCYVISVGVWIIGLSRVDVTIAYPLLS-LGYIINAIGAWYFLGEAISLQRLVAIGV 112
           IGGL  Y I+V  +   L  ++V++AYP+L+   + + A+ ++Y  GE   L + + + +
Sbjct: 46  IGGLLFYGINVVFFAKALDSMEVSVAYPILAGSAFAMLAVASYYIFGEPFHLSKRIGLSL 105

Query: 113 IIVGVVLLTR 122
           ++ G++LL R
Sbjct: 106 VLAGIILLAR 115