BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1929.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1308 Non COG                                                       106   1e-23
NMB1322 [L] COG2965 Primosomal replication protein N Nme Neisser...    46   2e-05
NMA1536 [L] COG2965 Primosomal replication protein N NmA Neisser...    45   3e-05
YPO3538 [L] COG2965 Primosomal replication protein N Ype Yersini...    43   1e-04
ZpriB [L] COG2965 Primosomal replication protein N EcZ Escherich...    37   0.009

>RSc1308 Non COG
          Length = 108

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 68/90 (75%)

Query: 1  VNQLQVIASLAERDVLRYTPAGIPIVTARLQHQSEQMEAGMKRQVEFEIAALAAGEISGA 60
          +N+LQ++A+LAER+V+RYTPAG+PIV   L +  + MEA   RQVEF I AL AG+++  
Sbjct: 10 INRLQLVATLAEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASV 69

Query: 61 LNRAALGEVFRFTGFLARRNRNSKSVVFHI 90
          L+R A G V    GFLAR++R+SK++VFHI
Sbjct: 70 LDRIAPGTVLECVGFLARKHRSSKALVFHI 99


>NMB1322 [L] COG2965 Primosomal replication protein N Nme Neisseria
          meningitidis MC58
          Length = 100

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 2  NQLQVIASLAERDV-LRYTPAGIPIVTARLQHQSEQMEAGMKRQVEFEIAALAAGEISGA 60
          N L  +A+L E+   +RYTPAGIP++   L+H+S Q E G +  V+ EI A   G  +  
Sbjct: 4  NNLVSLAALIEKVFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEE 63

Query: 61 LNRAALGEVFRFTGFLARRNRNS 83
                G      GFLA+++R S
Sbjct: 64 WQYRQ-GVYVHVEGFLAQKSRRS 85


>NMA1536 [L] COG2965 Primosomal replication protein N NmA Neisseria
          meningitidis Z2491
          Length = 100

 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 2  NQLQVIASLAERDV-LRYTPAGIPIVTARLQHQSEQMEAGMKRQVEFEIAALAAGEISGA 60
          N L  +A L E+   +RYTPAGIP++   L+H+S Q E G +  V+ EI A   G  +  
Sbjct: 4  NNLVSLAVLIEKVFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEE 63

Query: 61 LNRAALGEVFRFTGFLARRNRNS 83
                G      GFLA+++R S
Sbjct: 64 WQYRQ-GVYVHVEGFLAQKSRRS 85


>YPO3538 [L] COG2965 Primosomal replication protein N Ype Yersinia pestis
          Length = 106

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 1  VNQLQVIASLAERDVLRYTPAGIPIVTARLQHQSEQMEAGMKRQVEFEIAALAAGEISGA 60
           N+L +  ++ +  V + +P+GIP     L+H+S Q EAG  RQ    +  + +G+ S A
Sbjct: 4  TNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQSQA 63

Query: 61 LNRA-ALGEVFRFTGFL-ARRNRNS-KSVVFH 89
          L  +  +G      GF+   + RN    +V H
Sbjct: 64 LTHSITVGSQLTVEGFISCHQGRNGLNKLVLH 95


>ZpriB [L] COG2965 Primosomal replication protein N EcZ Escherichia coli
          O157:H7 EDL933
          Length = 104

 Score = 37.4 bits (85), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 2  NQLQVIASLAERDVLRYTPAGIPIVTARLQHQSEQMEAGMKRQVEFEIAALAAGEISGAL 61
          N+L +  ++    + + +P+GIP     L+H+S Q EAG  RQ   ++  + +G  + A+
Sbjct: 3  NRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAI 62

Query: 62 NRA-ALGEVFRFTGFLA 77
            +  +G      GF++
Sbjct: 63 THSITVGSRITVQGFIS 79