BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1924.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1093 [N] COG1334 Uncharacterized flagellar protein FlaG Pae Ps...    56   2e-08
VC2141 [N] COG1334 Uncharacterized flagellar protein FlaG Vch Vi...    50   1e-06
TM1124 [N] COG1334 Uncharacterized flagellar protein FlaG Tma Th...    48   4e-06
aq_2000 [N] COG1334 Uncharacterized flagellar protein FlaG Aae A...    46   2e-05
BS_yvyC [N] COG1334 Uncharacterized flagellar protein FlaG Bsu B...    40   0.001

>PA1093 [N] COG1334 Uncharacterized flagellar protein FlaG Pae Pseudomonas
           aeruginosa
          Length = 123

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 42  ARRATES--EVNDAVGKLNDFAAANAAALNFSKDQDTGKTIIKVVDTATDKVIRQIPSEE 99
           +R A+ES  ++  AV  +  F  +    LNFS D  +G+ ++KV+D  + +V+RQIPSEE
Sbjct: 44  SREASESRDDLGLAVSDIQSFVQSVKRNLNFSIDDSSGQVVVKVIDGDSGEVVRQIPSEE 103

Query: 100 AIAIAKSIDKMQGLLIKEKA 119
            + +A  +D +  +L + +A
Sbjct: 104 VLKLAARLDDVHSVLFETRA 123


>VC2141 [N] COG1334 Uncharacterized flagellar protein FlaG Vch Vibrio
           cholerae
          Length = 153

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 35  APAANPEARRATESEVNDAVGKLNDFAAANAAALNFSKDQDTGKTIIKVVDTATDKVIRQ 94
           A A   + +R  E ++   V ++N+F  +    L+F  D+++G+ ++ + + +T  +IRQ
Sbjct: 66  AMAQAKQRQRLNEEQLAKMVEQMNEFVKSINKGLSFRLDRESGREVVTIYEASTGDIIRQ 125

Query: 95  IPSEEAIAI----AKSIDKMQGLLI 115
           IP EE + +    A+  D   GLL+
Sbjct: 126 IPEEEMLEVLRRLAREQDHRSGLLM 150


>TM1124 [N] COG1334 Uncharacterized flagellar protein FlaG Tma Thermotoga
           maritima
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 41  EARRATESEVNDAV----GKLNDFAAANAAALNFSKDQDTGKTIIKVVDTATDKVIRQIP 96
           E ++  E +V  A+     KL            F  D +    I+K+ DT T ++IRQIP
Sbjct: 35  EMKKQQEEDVQRAIEEFSKKLEKLRKIFRGEAEFKYDSELNMVIVKIKDTETGEIIRQIP 94

Query: 97  SEEAIAIAKSIDKMQGLLIKEKA 119
            E  + IAKSI+++ G+L+ E+ 
Sbjct: 95  PEVMVKIAKSINELLGILVDERV 117


>aq_2000 [N] COG1334 Uncharacterized flagellar protein FlaG Aae Aquifex
           aeolicus
          Length = 121

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 34  VAPAANPEARRATESEVNDAVGKLNDFAAANAAALNFSKDQDTGKTIIKVVDTATDKVIR 93
           +   +N E ++  E E+   +  LN +       L    D+D    ++K+++  T+KVIR
Sbjct: 44  IQKVSNEELQKIIE-EIKRKLDYLNKY-------LKIEIDKDLEIPVVKIIEKDTNKVIR 95

Query: 94  QIPSEEAIAIAKSIDKMQGLLIKEKA 119
           QIP +  + + K ID+M G+LI E+ 
Sbjct: 96  QIPPDYLLELMKRIDEMLGILINERV 121


>BS_yvyC [N] COG1334 Uncharacterized flagellar protein FlaG Bsu Bacillus
           subtilis
          Length = 109

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 35/67 (52%)

Query: 52  DAVGKLNDFAAANAAALNFSKDQDTGKTIIKVVDTATDKVIRQIPSEEAIAIAKSIDKMQ 111
           + VG++N     +   L F       +  +KV++ +T++VIR+IP +  +    ++ +  
Sbjct: 42  EMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTEFL 101

Query: 112 GLLIKEK 118
           GL + EK
Sbjct: 102 GLFVDEK 108