BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1922.p         (152 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1840 [NUO] COG1516 Flagellin-specific chaperone FliS Ype Yers...   139   3e-33
STM1961 [NUO] COG1516 Flagellin-specific chaperone FliS Sty Salm...   133   1e-31
RSp0384 [NUO] COG1516 Flagellin-specific chaperone FliS Rso Rals...   127   1e-29
ECs2664 [NUO] COG1516 Flagellin-specific chaperone FliS Ecs Esch...   115   3e-26
ZfliS [NUO] COG1516 Flagellin-specific chaperone FliS EcZ Escher...   115   3e-26

>YPO1840 [NUO] COG1516 Flagellin-specific chaperone FliS Ype Yersinia pestis
          Length = 132

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 91/125 (72%)

Query: 6   KRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESITKAIL 65
           + G+ AYA +G+E+GV++ASPH+LI MLFDGA  A+   +  M +GNI  KG +I+KAI 
Sbjct: 4   RSGSQAYAQVGLESGVMSASPHQLIVMLFDGAQSALIRARILMSQGNIPAKGAAISKAID 63

Query: 66  IIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLEDIRSAWE 125
           II+NGL A LN + GGE+A NL +LY+YMSRRL  AN  N+   ++E+  LLE+I  AW 
Sbjct: 64  IINNGLSAGLNLDKGGEMAENLSALYDYMSRRLLYANLHNDEQAINEVSALLENIADAWR 123

Query: 126 QIGPN 130
           QIGPN
Sbjct: 124 QIGPN 128


>STM1961 [NUO] COG1516 Flagellin-specific chaperone FliS Sty Salmonella
           typhimurium LT2
          Length = 135

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 90/125 (72%)

Query: 8   GANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESITKAILII 67
           G  AYA + VE+ V++ASPH+LI MLFDGA  A+   +  + +G++  KGE+++KAI II
Sbjct: 6   GIKAYAQVSVESAVMSASPHQLIEMLFDGANSALVRARLFLEQGDVVAKGEALSKAINII 65

Query: 68  DNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLEDIRSAWEQI 127
           DNGL+A L++E GGE+A NL  LY+YM RRL +AN  N+   ++E+ GLL +I  AW+QI
Sbjct: 66  DNGLKAGLDQEKGGEIATNLSELYDYMIRRLLQANLRNDAQAIEEVEGLLSNIAEAWKQI 125

Query: 128 GPNAA 132
            P A+
Sbjct: 126 SPKAS 130


>RSp0384 [NUO] COG1516 Flagellin-specific chaperone FliS Rso Ralstonia
           solanacearum
          Length = 140

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 84/122 (68%)

Query: 7   RGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESITKAILI 66
           R   AYA +GVET V+ ASPH+LI MLF+ A  AI+L   +M  G++  +  +  K I I
Sbjct: 6   RAIGAYAQVGVETSVVDASPHRLIAMLFEAARAAISLASAAMQRGDVLVRLRAFDKVISI 65

Query: 67  IDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLEDIRSAWEQ 126
           I  GL+ASL++E GGE+A  LD+LY+YM RRL  ANATN+ AIL+E+  LL  ++ AW +
Sbjct: 66  IGQGLQASLDRERGGEIATQLDTLYDYMLRRLLLANATNDAAILEEVDRLLAPLQEAWSE 125

Query: 127 IG 128
           IG
Sbjct: 126 IG 127


>ECs2664 [NUO] COG1516 Flagellin-specific chaperone FliS Ecs Escherichia
           coli O157:H7
          Length = 136

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 86/129 (66%), Gaps = 2/129 (1%)

Query: 7   RGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESITKAILI 66
           +G  AYA IGVE+ V++AS  +L+TMLFDG L A+   +  M + N + KG S++KAI I
Sbjct: 5   KGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARLFMQDNNQQGKGVSLSKAINI 64

Query: 67  IDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLEDIRSAWEQ 126
           I+NGLR SL++E   EL  NL +LY YM RRL +AN  N+ + ++E+  L+ +I  AW++
Sbjct: 65  IENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLRNDVSAVEEVETLMRNIADAWKE 124

Query: 127 --IGPNAAQ 133
             + P+  Q
Sbjct: 125 SLLSPSLIQ 133


>ZfliS [NUO] COG1516 Flagellin-specific chaperone FliS EcZ Escherichia
           coli O157:H7 EDL933
          Length = 136

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 86/129 (66%), Gaps = 2/129 (1%)

Query: 7   RGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESITKAILI 66
           +G  AYA IGVE+ V++AS  +L+TMLFDG L A+   +  M + N + KG S++KAI I
Sbjct: 5   KGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARLFMQDNNQQGKGVSLSKAINI 64

Query: 67  IDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLEDIRSAWEQ 126
           I+NGLR SL++E   EL  NL +LY YM RRL +AN  N+ + ++E+  L+ +I  AW++
Sbjct: 65  IENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLRNDVSAVEEVETLMRNIADAWKE 124

Query: 127 --IGPNAAQ 133
             + P+  Q
Sbjct: 125 SLLSPSLIQ 133