BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1921.p         (109 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0385 Non COG                                                        62   4e-10
RSc2897 Non COG                                                        58   7e-09
YPO1839 Non COG                                                        39   0.002
SSO3148 [C] COG1252 NADH dehydrogenase, FAD-containing subunit S...    33   0.16 
mll1107 [MU] COG1538 Outer membrane protein Mlo Mesorhizobium loti     31   0.56 

>RSp0385 Non COG
          Length = 118

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 58/105 (55%)

Query: 2   NGDDVIALYESISQLTDEMLSAARAGDWDRLATLEAQCGKHIASLRDSEENVSLSEPLRH 61
           + + +   YE+I++LT EM++AA  G+W+ ++TLE +   ++  LR SE +  LS     
Sbjct: 9   DSESLFICYEAIARLTAEMVAAADVGNWEVVSTLERESATYVEMLRRSEPHPPLSHADLE 68

Query: 62  RKVDIIRKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYG 106
           RK  ++ +ILEDD  +R +  P L +L   I + +        YG
Sbjct: 69  RKRALLVRILEDDARVRAVVHPRLDRLQKRIDTARRASNASLAYG 113


>RSc2897 Non COG
          Length = 122

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 4  DDVIALYESISQLTDEMLSAARAGDWDRLATLEAQCGKHIASLRDSEENVSLSEPLRHRK 63
          D + A YE+I+ L+ EM+ AA AGDW  ++ LE +C  ++  L  +     LSE    RK
Sbjct: 15 DSLFASYEAIASLSTEMVEAAEAGDWAGVSALERECALYMERLGRTPSRPVLSEAELRRK 74

Query: 64 VDIIRKILEDDRDIRNLTEP 83
           D++ +IL +D  +R L  P
Sbjct: 75 RDLMMRILANDARVRALVCP 94


>YPO1839 Non COG
          Length = 120

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 16/105 (15%)

Query: 10  YESISQLTDEMLSAARAGDWDRLATLEAQCGKHIASLRDSEENVSLS--------EPLRH 61
           Y+ I  L+++ML  A   +W+ L  LE    K +    ++  N+++S        E LR 
Sbjct: 11  YQQILTLSEQMLMLATVENWNALVDLEMTYLKAV----ENTANITISSCTSPVLQELLRQ 66

Query: 62  RKVDIIRKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYG 106
           +    +R ILE++ +I+ L +  L KLS L+  +  +Q +  TYG
Sbjct: 67  K----LRSILENEIEIKRLLQRRLDKLSELVGQSTRQQAVNRTYG 107


>SSO3148 [C] COG1252 NADH dehydrogenase, FAD-containing subunit Sso
           Sulfolobus solfataricus
          Length = 350

 Score = 33.1 bits (74), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 50  EENVSLSEPLRHRKVDIIRKILEDD-RDIRNLTEPGLRKLSALIQSNQTEQKL-----LN 103
           E+N+ LS  L HRKVD+  KIL+ D ++ + +T  G  K   LI +   EQ L       
Sbjct: 45  EKNLPLSYALIHRKVDVKAKILKVDFKEKKVITTNGEIKFDKLIIALGYEQDLSKIKGAE 104

Query: 104 TYGMG 108
            YG+G
Sbjct: 105 NYGIG 109


>mll1107 [MU] COG1538 Outer membrane protein Mlo Mesorhizobium loti
          Length = 466

 Score = 31.2 bits (69), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 30  DRLATLEAQCGKHIASLRDSEENVSLSEPLRHRKVDIIRKILEDDRDIRNLTEPGLRKLS 89
           + +A  E+Q    + SLR++EEN   S    +  +D+IR     DR I  LTE  L+ L+
Sbjct: 116 NNVAAAESQVKASVESLRNTEENTLFSAATAY--MDVIR-----DRQIAVLTEQNLQFLT 168