BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1912.p         (149 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1826 [NUO] COG2882 Flagellar biosynthesis chaperone Ype Yersi...    86   2e-17
RSp0394 [NUO] COG2882 Flagellar biosynthesis chaperone Rso Ralst...    84   1e-16
STM1973 [NUO] COG2882 Flagellar biosynthesis chaperone Sty Salmo...    74   1e-13
ZfliJ [NUO] COG2882 Flagellar biosynthesis chaperone EcZ Escheri...    70   1e-12
ECs2681 [NUO] COG2882 Flagellar biosynthesis chaperone Ecs Esche...    70   1e-12

>YPO1826 [NUO] COG2882 Flagellar biosynthesis chaperone Ype Yersinia pestis
          Length = 148

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 85/142 (59%)

Query: 3   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 62
           M + S L TL +LA K  ++A+ +LG   +  + A+Q+L +L  Y+D+Y  R  +TL NG
Sbjct: 1   MKSQSPLVTLCDLAQKAVEQASTQLGHVRQSYQNAEQQLTMLLTYQDEYRERLNDTLCNG 60

Query: 63  LTALAYRNFQLFLEKIDTAIDGQVNVVQSSQQRVAEARAAWQACERKRMSYDTLATRARD 122
           + + +++N+Q F++ ++ AID     +     +V +A   WQ  +++  +++TL  RA  
Sbjct: 61  MASSSWQNYQQFIQTLEQAIDQHRKQLAQWSIKVEQAVKYWQEKQQRLNAFETLQERAET 120

Query: 123 QEMRKENKRDQKSMDEHASRIS 144
            + ++EN+ DQK MDE A R S
Sbjct: 121 TQRQQENRLDQKLMDEFAQRAS 142


>RSp0394 [NUO] COG2882 Flagellar biosynthesis chaperone Rso Ralstonia
           solanacearum
          Length = 155

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 83/142 (58%)

Query: 2   TMATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTN 61
           T   P  L+T++ELA K+T++AT+ +GR +   E A QKL +L  YR++Y  + Q     
Sbjct: 3   TTHKPFRLETVLELAKKDTEKATQEVGRLMNTRELAAQKLAMLSDYRNNYRQQMQVNAEG 62

Query: 62  GLTALAYRNFQLFLEKIDTAIDGQVNVVQSSQQRVAEARAAWQACERKRMSYDTLATRAR 121
           G+ A    N+  F++++ +A+D Q   + + + ++  +R  W   +R+  S+D L  R  
Sbjct: 63  GIDAARLHNYAAFIDRLGSAVDHQRGTISALEAQLQRSRDNWLEKQRREQSFDILRQRHV 122

Query: 122 DQEMRKENKRDQKSMDEHASRI 143
           +++ + + +R Q+  DEHA+++
Sbjct: 123 EEQRQDQERRAQRENDEHAAKL 144


>STM1973 [NUO] COG2882 Flagellar biosynthesis chaperone Sty Salmonella
           typhimurium LT2
          Length = 147

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 81/145 (55%)

Query: 3   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 62
           MA   AL+TL +LA KE D+A + LG   R  ++A+++L +L  Y+++Y +     + NG
Sbjct: 1   MAQHGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNG 60

Query: 63  LTALAYRNFQLFLEKIDTAIDGQVNVVQSSQQRVAEARAAWQACERKRMSYDTLATRARD 122
           + +  + N+Q F++ ++ AI+     +    Q+V  A  +W+  +++  ++ TL  R   
Sbjct: 61  IASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTA 120

Query: 123 QEMRKENKRDQKSMDEHASRISFYK 147
             +  EN+ DQK MDE A R +  K
Sbjct: 121 AALLAENRMDQKKMDEFAQRAAMRK 145


>ZfliJ [NUO] COG2882 Flagellar biosynthesis chaperone EcZ Escherichia coli
           O157:H7 EDL933
          Length = 147

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 79/145 (54%)

Query: 3   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 62
           MA   AL TL +LA KE ++A + LG   R  ++A+++L +L  Y+++Y       ++ G
Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

Query: 63  LTALAYRNFQLFLEKIDTAIDGQVNVVQSSQQRVAEARAAWQACERKRMSYDTLATRARD 122
           +T+  + N+Q F++ ++ AI      +    Q+V  A  +W+  +++  ++ TL  R   
Sbjct: 61  MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

Query: 123 QEMRKENKRDQKSMDEHASRISFYK 147
             +  EN+ DQK MDE A R +  K
Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRK 145


>ECs2681 [NUO] COG2882 Flagellar biosynthesis chaperone Ecs Escherichia coli
           O157:H7
          Length = 147

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 79/145 (54%)

Query: 3   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 62
           MA   AL TL +LA KE ++A + LG   R  ++A+++L +L  Y+++Y       ++ G
Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

Query: 63  LTALAYRNFQLFLEKIDTAIDGQVNVVQSSQQRVAEARAAWQACERKRMSYDTLATRARD 122
           +T+  + N+Q F++ ++ AI      +    Q+V  A  +W+  +++  ++ TL  R   
Sbjct: 61  MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

Query: 123 QEMRKENKRDQKSMDEHASRISFYK 147
             +  EN+ DQK MDE A R +  K
Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRK 145