BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1905.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0374 [NU] COG1987 Flagellar biosynthesis pathway, component F...   111   4e-25
STM1980 [NU] COG1987 Flagellar biosynthesis pathway, component F...   104   4e-23
YPO1820a [NU] COG1987 Flagellar biosynthesis pathway, component ...   100   6e-22
BU083 [NU] COG1987 Flagellar biosynthesis pathway, component Fli...    99   2e-21
BS_fliQ [NU] COG1987 Flagellar biosynthesis pathway, component F...    99   3e-21

>RSp0374 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Rso
          Ralstonia solanacearum
          Length = 89

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 71/89 (79%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLVVSIFQAATQINEQTLAFIPKLVGVFL 60
          MTPE V+ M RQAM+V ++I APML+ +L++GL+V++FQAATQ+NEQTL+FIPKL+ V  
Sbjct: 1  MTPEYVLNMARQAMQVAMMIGAPMLLVSLIVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60

Query: 61 ALIIAGPWMLTIILDYMRTMFSGIPAMVQ 89
           +I+AGPW+L +I+DY R + + IP  V 
Sbjct: 61 TMILAGPWVLGVIVDYTRDVLTNIPNYVN 89


>STM1980 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Sty
          Salmonella typhimurium LT2
          Length = 89

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 76/88 (86%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLVVSIFQAATQINEQTLAFIPKLVGVFL 60
          MTPESVM MG +AM+V L +AAP+L+ AL+ GL++SI QAATQINE TL+FIPK+V VF+
Sbjct: 1  MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFI 60

Query: 61 ALIIAGPWMLTIILDYMRTMFSGIPAMV 88
          A+I+AGPWML ++LDY+RT+FS +P ++
Sbjct: 61 AIIVAGPWMLNLLLDYVRTLFSNLPYII 88


>YPO1820a [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Ype
          Yersinia pestis
          Length = 89

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 73/88 (82%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLVVSIFQAATQINEQTLAFIPKLVGVFL 60
          MTPESVM +G +AM++ L +AAP+L+ AL+ GL+VS+ QAATQINE TL+FIPK++ VF 
Sbjct: 1  MTPESVMALGTEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFT 60

Query: 61 ALIIAGPWMLTIILDYMRTMFSGIPAMV 88
           ++IAGPWML +ILDYMR +F+ +P ++
Sbjct: 61 TMVIAGPWMLNLILDYMRNLFTSLPTLI 88


>BU083 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Buc
          Buchnera sp. APS
          Length = 89

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 64/84 (76%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLVVSIFQAATQINEQTLAFIPKLVGVFL 60
          MT E VM +   AM+V L+IA+P+L+ AL+ GL++SI QAATQ+NEQTL+FIPK++ V  
Sbjct: 1  MTSEYVMELFYNAMKVALIIASPLLLAALISGLIISILQAATQVNEQTLSFIPKIISVLG 60

Query: 61 ALIIAGPWMLTIILDYMRTMFSGI 84
           + I GPWML ++LDYM  +F+ I
Sbjct: 61 VISILGPWMLGVMLDYMHNLFNNI 84


>BS_fliQ [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Bsu
          Bacillus subtilis
          Length = 89

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLVVSIFQAATQINEQTLAFIPKLVGVFL 60
          M+ E V++M  +A+ VTL+I+ P+L  ALL+GL+VSIFQA TQI EQTLAFIPK+V V L
Sbjct: 1  MSSEFVISMAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLL 60

Query: 61 ALIIAGPWMLTIILDYMRTMFSGI 84
          ALI  GPWML+ IL +   +FS +
Sbjct: 61 ALIFFGPWMLSTILSFTTELFSNL 84