BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1900.p (376 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0349 [N] COG1706 Flagellar basal-body P-ring protein Rso Rals... 435 e-121 YPO1806 [N] COG1706 Flagellar basal-body P-ring protein Ype Yers... 380 e-105 PA1084 [N] COG1706 Flagellar basal-body P-ring protein Pae Pseud... 376 e-104 flgI [N] COG1706 Flagellar basal-body P-ring protein Eco Escheri... 353 4e-97 STM1181 [N] COG1706 Flagellar basal-body P-ring protein Sty Salm... 353 5e-97 >RSp0349 [N] COG1706 Flagellar basal-body P-ring protein Rso Ralstonia solanacearum Length = 369 Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/350 (62%), Positives = 274/350 (78%), Gaps = 2/350 (0%) Query: 27 ANAERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQTTQTPFTVQSVISMLQQLGVNVPTG 86 A+A+R+KDL +I GVR+N L+GYGLVVGLDGSGDQTTQTPFT+QS +ML Q G+NVP+G Sbjct: 22 AHADRIKDLTTIAGVRENALIGYGLVVGLDGSGDQTTQTPFTIQSFNNMLSQFGINVPSG 81 Query: 87 TSSNMQLKNVAAAMVTATLPAFAQPGQLIDVTVSSIGNAKSIRGGTLLMAPLKGADGQIY 146 S +QLKN AA +VTA+LPAF +PGQ IDVTVSSIGNAKS+RGGTLL+ PLKG DGQ+Y Sbjct: 82 AS--IQLKNTAAVVVTASLPAFVRPGQTIDVTVSSIGNAKSLRGGTLLLTPLKGVDGQLY 139 Query: 147 AIAQGNIVIGGAGGSAAGSSTIINQLSAGRISGGATVERAVPSSLGGGDMVVLELNDNDF 206 A+AQGN+VIGGAG SA GS INQL AGRI+ GATVER V +++G + L+ DF Sbjct: 140 ALAQGNVVIGGAGASANGSKVQINQLGAGRIANGATVERTVQATVGEAGSIQLDTGTTDF 199 Query: 207 STASRVVDALNKRFGSDTAVAQDGRVIRVRAPISSGDRVAFLGALENVDVTPGKLAAKVI 266 T +V+A+NK+FG+DTA A DGR + VRAP + DRV F+ L+N++VTP + AA+V+ Sbjct: 200 GTVQNIVNAINKQFGADTAEAADGRTVNVRAPALAADRVGFVAKLQNIEVTPAQAAARVV 259 Query: 267 LNARTGSVVMNQSVMLETCAVSHGNLSVVIQADNAVSQPNALSGGQTAGVQNAQVSINKE 326 +NARTGSVVMNQ V LE CAV+HGNLSV I + VSQP S GQT + + + ++ Sbjct: 260 VNARTGSVVMNQQVKLEPCAVAHGNLSVTISTEPVVSQPAPFSQGQTVAGARSNIEVKQQ 319 Query: 327 PGKVMLLKGGASLADVVKALNAIGATPQDLLAILQAMKAAGSLRAELEVI 376 G ++ +KGG +LADVVKA+NAIGA PQDL++ILQAMKAA +LRA+LE+I Sbjct: 320 GGSLINVKGGTNLADVVKAINAIGANPQDLISILQAMKAANALRADLEII 369 >YPO1806 [N] COG1706 Flagellar basal-body P-ring protein Ype Yersinia pestis Length = 369 Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/355 (57%), Positives = 270/355 (76%), Gaps = 7/355 (1%) Query: 25 VPANAERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQTTQTPFTVQSVISMLQQLGVNVP 84 +PA+AER++DL ++QGVR N L+GYGLVVGLDGSGDQT QTPFT QS+ +ML QLG+ VP Sbjct: 19 LPASAERIRDLVTVQGVRDNALIGYGLVVGLDGSGDQTMQTPFTTQSLSNMLSQLGITVP 78 Query: 85 TGTSSNMQLKNVAAAMVTATLPAFAQPGQLIDVTVSSIGNAKSIRGGTLLMAPLKGADGQ 144 GT NMQLKNVAA MVTA LPAF++ GQ IDV VSS+GNAKSIRGGTLLM PLKG D Q Sbjct: 79 PGT--NMQLKNVAAVMVTAKLPAFSRAGQTIDVVVSSMGNAKSIRGGTLLMTPLKGVDNQ 136 Query: 145 IYAIAQGNIVIGGAGGSAAGSSTIINQLSAGRISGGATVERAVPSSLGGGDMVVLELNDN 204 +YA+AQGN+++GGAG +A GSS +NQL+ GRIS GAT+ER +P++ G ++ L+LN Sbjct: 137 VYALAQGNVLVGGAGAAAGGSSVQVNQLAGGRISNGATIERELPTTFGTDGIINLQLNSE 196 Query: 205 DFSTASRVVDALNKRFGSDTAVAQDGRVIRVRAPISSGDRVAFLGALEN--VDVTPGKLA 262 DF+ A +V DA+N++ G +A A D R I+V P +V FL ++N ++V PG Sbjct: 197 DFTLAQQVSDAINRQRGFGSATAIDARTIQVLVPRGGSSQVRFLADIQNIPINVDPGD-- 254 Query: 263 AKVILNARTGSVVMNQSVMLETCAVSHGNLSVVIQADNAVSQPNA-LSGGQTAGVQNAQV 321 AKVI+N+RTGSVVMN++V+L++CAV+ GNLSVV+ N VSQP+ GGQT N Q+ Sbjct: 255 AKVIINSRTGSVVMNRNVVLDSCAVAQGNLSVVVDKQNIVSQPDTPFGGGQTVVTPNTQI 314 Query: 322 SINKEPGKVMLLKGGASLADVVKALNAIGATPQDLLAILQAMKAAGSLRAELEVI 376 S+ ++ G + + +L +VV+ALN++GATP DL++ILQAM++AG LRA+LE+I Sbjct: 315 SVQQQGGVLQRVNASPNLNNVVRALNSLGATPIDLMSILQAMESAGCLRAKLEII 369 >PA1084 [N] COG1706 Flagellar basal-body P-ring protein Pae Pseudomonas aeruginosa Length = 369 Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/348 (56%), Positives = 250/348 (71%), Gaps = 2/348 (0%) Query: 30 ERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQTTQTPFTVQSVISMLQQLGVNVPTGTSS 89 ERLKD+ASIQGVR NQL+GYGLVVGL GSGDQTTQTPFT+Q+ +ML Q G+ VP Sbjct: 23 ERLKDIASIQGVRTNQLIGYGLVVGLSGSGDQTTQTPFTLQTFNNMLAQFGIKVPANVG- 81 Query: 90 NMQLKNVAAAMVTATLPAFAQPGQLIDVTVSSIGNAKSIRGGTLLMAPLKGADGQIYAIA 149 N+QLKNVAA V A LP FA+PGQ IDVTVSSIGNAKS+RGG+LLM PLKG DGQ+YA+A Sbjct: 82 NVQLKNVAAVSVHADLPPFAKPGQPIDVTVSSIGNAKSLRGGSLLMTPLKGIDGQVYAVA 141 Query: 150 QGNIVIGGAGGSAA-GSSTIINQLSAGRISGGATVERAVPSSLGGGDMVVLELNDNDFST 208 QGN+V+GG GS +N SAGRI GATVERAVPS G+ + L LN DF+T Sbjct: 142 QGNLVVGGFDAEGRDGSKITVNVPSAGRIPAGATVERAVPSGFDQGNSLTLNLNRPDFTT 201 Query: 209 ASRVVDALNKRFGSDTAVAQDGRVIRVRAPISSGDRVAFLGALENVDVTPGKLAAKVILN 268 A R+VD +N+ G A A DG +RV AP+ RV +L LEN+DV PG+ AKVI+N Sbjct: 202 AKRIVDRINELLGPGVAHAVDGGSVRVSAPLDPNQRVDYLSILENLDVQPGEAVAKVIIN 261 Query: 269 ARTGSVVMNQSVMLETCAVSHGNLSVVIQADNAVSQPNALSGGQTAGVQNAQVSINKEPG 328 +RTG++V+ Q+V + AV+HG+L+V I D VSQP A S GQTA V ++V+ +E Sbjct: 262 SRTGTIVIGQNVKVSPAAVTHGSLTVSITEDPIVSQPGAFSNGQTAVVPRSRVNAEEETK 321 Query: 329 KVMLLKGGASLADVVKALNAIGATPQDLLAILQAMKAAGSLRAELEVI 376 + G +L D+V+A+N +GA P DL+AIL+A+K AG+L+A+L VI Sbjct: 322 PMFKFGPGTTLDDIVRAVNQVGAAPSDLMAILEALKQAGALQADLIVI 369 >flgI [N] COG1706 Flagellar basal-body P-ring protein Eco Escherichia coli K12 Length = 365 Score = 353 bits (906), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 208/371 (56%), Positives = 270/371 (72%), Gaps = 11/371 (2%) Query: 9 KLLSAAAVAALCLAAAVPANAERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQTTQTPFT 68 K LSA + L A AER++DL S+QGVRQN L+GYGLVVGLDG+GDQTTQTPFT Sbjct: 3 KFLSAL----ILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFT 58 Query: 69 VQSVISMLQQLGVNVPTGTSSNMQLKNVAAAMVTATLPAFAQPGQLIDVTVSSIGNAKSI 128 Q++ +ML QLG+ VPTGT NMQLKNVAA MVTA+LP F + GQ IDV VSS+GNAKS+ Sbjct: 59 TQTLNNMLSQLGITVPTGT--NMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSL 116 Query: 129 RGGTLLMAPLKGADGQIYAIAQGNIVIGGAGGSAAGSSTIINQLSAGRISGGATVERAVP 188 RGGTLLM PLKG D Q+YA+AQGNI++GGAG SA GSS +NQL+ GRI+ GA +ER +P Sbjct: 117 RGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELP 176 Query: 189 SSLGGGDMVVLELNDNDFSTASRVVDALNKRFGSDTAVAQDGRVIRVRAPISSGDRVAFL 248 S G G+ + L+LND DFS A ++ D +N+ G +A A D R I+VR P + +V FL Sbjct: 177 SQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDARTIQVRVPSGNSSQVRFL 236 Query: 249 GALEN--VDVTPGKLAAKVILNARTGSVVMNQSVMLETCAVSHGNLSVVIQADNAVSQPN 306 ++N V+VTP AKV++N+RTGSVVMN+ V L++CAV+ GNLSV + VSQP+ Sbjct: 237 ADIQNMQVNVTPQD--AKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQANVSQPD 294 Query: 307 A-LSGGQTAGVQNAQVSINKEPGKVMLLKGGASLADVVKALNAIGATPQDLLAILQAMKA 365 GGQT Q+ + + G + ++ ASL +VV+ALNA+GATP DL++ILQ+M++ Sbjct: 295 TPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRALNALGATPMDLMSILQSMQS 354 Query: 366 AGSLRAELEVI 376 AG LRA+LE+I Sbjct: 355 AGCLRAKLEII 365 >STM1181 [N] COG1706 Flagellar basal-body P-ring protein Sty Salmonella typhimurium LT2 Length = 365 Score = 353 bits (905), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 201/364 (55%), Positives = 270/364 (74%), Gaps = 4/364 (1%) Query: 15 AVAALCLA-AAVPANAERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQTTQTPFTVQSVI 73 A+A + LA A A+AER++DL S+QGVR+N L+GYGLVVGLDG+GDQTTQTPFT Q++ Sbjct: 4 ALAGIVLALVATLAHAERIRDLTSVQGVRENSLIGYGLVVGLDGTGDQTTQTPFTTQTLN 63 Query: 74 SMLQQLGVNVPTGTSSNMQLKNVAAAMVTATLPAFAQPGQLIDVTVSSIGNAKSIRGGTL 133 +ML QLG+ VPTGT NMQLKNVAA MVTA+ P FA+ GQ IDV VSS+GNAKS+RGGTL Sbjct: 64 NMLSQLGITVPTGT--NMQLKNVAAVMVTASYPPFARQGQTIDVVVSSMGNAKSLRGGTL 121 Query: 134 LMAPLKGADGQIYAIAQGNIVIGGAGGSAAGSSTIINQLSAGRISGGATVERAVPSSLGG 193 LM PLKG D Q+YA+AQGNI++GGAG SA GSS +NQL+ GRI+ GA +ER +P+ G Sbjct: 122 LMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAIIERELPTQFGA 181 Query: 194 GDMVVLELNDNDFSTASRVVDALNKRFGSDTAVAQDGRVIRVRAPISSGDRVAFLGALEN 253 G+ + L+LND DF+ A ++ DA+N+ G +A A D R ++VR P + +V FL ++N Sbjct: 182 GNTINLQLNDEDFTMAQQITDAINRARGYGSATALDARTVQVRVPSGNSSQVRFLADIQN 241 Query: 254 VDVTPGKLAAKVILNARTGSVVMNQSVMLETCAVSHGNLSVVIQADNAVSQPNA-LSGGQ 312 ++V AKV++N+RTGSVVMN+ V L++CAV+ GNLSV + V+QPN GGQ Sbjct: 242 MEVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQLNVNQPNTPFGGGQ 301 Query: 313 TAGVQNAQVSINKEPGKVMLLKGGASLADVVKALNAIGATPQDLLAILQAMKAAGSLRAE 372 T Q+ + + G + ++ A+L VV+ALNA+GATP DL++ILQ+M++AG LRA+ Sbjct: 302 TVVTPQTQIDLRQSGGSLQSVRSSANLNSVVRALNALGATPMDLMSILQSMQSAGCLRAK 361 Query: 373 LEVI 376 LE+I Sbjct: 362 LEII 365