BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1895.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia ... 174 1e-43 ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherich... 157 2e-38 ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia... 157 2e-38 flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia ... 157 2e-38 STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonell... 152 8e-37 >YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia pestis Length = 225 Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 130/206 (63%), Gaps = 8/206 (3%) Query: 35 IQNRFLTLLIAQMKNQDPSNPMDNSQLTSQMAQLSTVSGISQLNNSLSTLMSSINSSQAL 94 +QNRFLTLL+AQ+KNQDP+NPM+N++LT+Q+AQ++TVSGI +LN +L + I+SSQ+L Sbjct: 28 LQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSL 87 Query: 95 STANMIGHSVLAPGNSIQLMSDTSKDANGNDVTSQKAVLGVNLSGTASSVIVTIKDSTGA 154 ++IG V+ PG +I S D T G+ L A V TI DS G Sbjct: 88 YATSLIGRGVMVPGTNIFTGS--------TDGTVSTTPFGLELQRPADKVTATISDSNGQ 139 Query: 155 VVHTTDLGTQAAGAVPVIWDGSNDSGGKAPDGKYTFTVSASNNGTAVAATALSFGTVSSV 214 VV T ++G AG WDGS D+GG APDG YT ++ASN G ++ AT L++ V+ V Sbjct: 140 VVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGV 199 Query: 215 STAADGVKLNVTNVGTIKPTDVVQIL 240 + ADG KL++ GTI +V QIL Sbjct: 200 TRGADGSKLDLGLAGTITLDEVRQIL 225 >ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherichia coli O157:H7 Length = 231 Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 124/206 (60%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLIAQMKNQDPSNPMDNSQLTSQMAQLSTVSGISQLNNSLSTLMSSINSSQAL 94 +Q+ FLTLL+AQ+KNQDP+NPM+N++LTSQ+AQ+STVSGI +LN +L ++ I++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 STANMIGHSVLAPGNSIQLMSDTSKDANGNDVTSQKAVLGVNLSGTASSVIVTIKDSTGA 154 +N+IGH V+ PG ++ ++ T + T+ GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV--LAGTGSEEGAVTTTTP---FGVELQQAADKVTATITDKNGA 145 Query: 155 VVHTTDLGTQAAGAVPVIWDGSNDSGGKAPDGKYTFTVSASNNGTAVAATALSFGTVSSV 214 VV T D+G AG WDG+ G AP+G Y +SASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGVKLNVTNVGTIKPTDVVQIL 240 +G L++ GT +V QI+ Sbjct: 206 IRGNNGNTLDLGTYGTTTLDEVRQII 231 >ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 231 Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 124/206 (60%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLIAQMKNQDPSNPMDNSQLTSQMAQLSTVSGISQLNNSLSTLMSSINSSQAL 94 +Q+ FLTLL+AQ+KNQDP+NPM+N++LTSQ+AQ+STVSGI +LN +L ++ I++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 STANMIGHSVLAPGNSIQLMSDTSKDANGNDVTSQKAVLGVNLSGTASSVIVTIKDSTGA 154 +N+IGH V+ PG ++ ++ T + T+ GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV--LAGTGSEEGAVTTTTP---FGVELQQAADKVTATITDKNGA 145 Query: 155 VVHTTDLGTQAAGAVPVIWDGSNDSGGKAPDGKYTFTVSASNNGTAVAATALSFGTVSSV 214 VV T D+G AG WDG+ G AP+G Y +SASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGVKLNVTNVGTIKPTDVVQIL 240 +G L++ GT +V QI+ Sbjct: 206 IRGNNGBTLDLGTYGTTTLDEVRQII 231 >flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia coli K12 Length = 231 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 123/206 (59%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLIAQMKNQDPSNPMDNSQLTSQMAQLSTVSGISQLNNSLSTLMSSINSSQAL 94 +Q+ FLTLL+AQ+KNQDP+NPM+N++LTSQ+AQ+STVSGI +LN +L ++ I++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 STANMIGHSVLAPGNSIQLMSDTSKDANGNDVTSQKAVLGVNLSGTASSVIVTIKDSTGA 154 +N+IGH V+ PG ++ ++ T + T+ GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV--LAGTGSEEGAVTTTTP---FGVELQQAADKVTATITDKNGA 145 Query: 155 VVHTTDLGTQAAGAVPVIWDGSNDSGGKAPDGKYTFTVSASNNGTAVAATALSFGTVSSV 214 VV T D+G AG WDG+ G AP+G Y +SASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGVKLNVTNVGTIKPTDVVQIL 240 G L++ GT +V QI+ Sbjct: 206 IRGNSGNTLDLGTYGTTTLDEVRQII 231 >STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonella typhimurium LT2 Length = 232 Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 19 SSTSSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNSQLTSQMAQLSTVSGISQLN 78 ++T S S +N+ D +Q+ FLTLL+AQ+KNQDP+NP+ N++LT+Q+AQ+STVSGI +LN Sbjct: 17 TTTGSGSMTGSNAAD-LQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLN 75 Query: 79 NSLSTLMSSINSSQALSTANMIGHSVLAPGNSIQLMSDTSKDANGNDVTSQKAVLGVNLS 138 +L + I++SQ+L +IGH V+ PG +I K A VTS GV L Sbjct: 76 TTLGAISGQIDNSQSLQATTLIGHGVMVPGTTIL----AGKGAEEGAVTSTTP-FGVELQ 130 Query: 139 GTASSVIVTIKDSTGAVVHTTDLGTQAAGAVPVIWDGSNDSGGKAPDGKYTFTVSASNNG 198 A V TI D G VV T ++G AG WDG G P+G Y ++ASN G Sbjct: 131 QPADKVTATITDKDGRVVRTLEIGELRAGVHTFTWDGKQTDGTTVPNGSYNIAITASNGG 190 Query: 199 TAVAATALSFGTVSSVSTAADGVKLNVTNVGTIKPTDVVQIL 240 T + A L F V V+ ++G L++ GT +V QI+ Sbjct: 191 TQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII 232