BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1894.p         (134 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1175 [N] COG1558 Flagellar basal body rod protein Sty Salmone...   179   2e-45
flgC [N] COG1558 Flagellar basal body rod protein Eco Escherichi...   177   4e-45
ZflgC [N] COG1558 Flagellar basal body rod protein EcZ Escherich...   177   4e-45
ECs1452 [N] COG1558 Flagellar basal body rod protein Ecs Escheri...   177   4e-45
YPO1800 [N] COG1558 Flagellar basal body rod protein Ype Yersini...   173   1e-43

>STM1175 [N] COG1558 Flagellar basal body rod protein Sty Salmonella
           typhimurium LT2
          Length = 134

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 107/134 (79%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGDVKDS 60
           M+L NIF++AGSA++AQ++RLN  ASN+ANADS T PDG PY+AKQVVFQ          
Sbjct: 1   MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPLADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKVA+V+E QAP KLVY+P +PLAD NGYV MPNV+ V EMVN +SASRSYQ N+E +N
Sbjct: 61  GVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEMVNTMSASRSYQANIEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>flgC [N] COG1558 Flagellar basal body rod protein Eco Escherichia coli
           K12
          Length = 134

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 105/134 (78%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGDVKDS 60
           M+L NIF++AGSA++AQ+QRLN  ASN+ANADS T PDG PY+AKQVVFQ          
Sbjct: 1   MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPLADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKVA V+E QAP KLVY+P +PLAD  GYV MPNV+ V EMVN +SASRSYQ NVE +N
Sbjct: 61  GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>ZflgC [N] COG1558 Flagellar basal body rod protein EcZ Escherichia coli
           O157:H7 EDL933
          Length = 134

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 105/134 (78%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGDVKDS 60
           M+L NIF++AGSA++AQ+QRLN  ASN+ANADS T PDG PY+AKQVVFQ          
Sbjct: 1   MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPLADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKVA V+E QAP KLVY+P +PLAD  GYV MPNV+ V EMVN +SASRSYQ NVE +N
Sbjct: 61  GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>ECs1452 [N] COG1558 Flagellar basal body rod protein Ecs Escherichia coli
           O157:H7
          Length = 134

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 105/134 (78%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGDVKDS 60
           M+L NIF++AGSA++AQ+QRLN  ASN+ANADS T PDG PY+AKQVVFQ          
Sbjct: 1   MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPLADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKVA V+E QAP KLVY+P +PLAD  GYV MPNV+ V EMVN +SASRSYQ NVE +N
Sbjct: 61  GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>YPO1800 [N] COG1558 Flagellar basal body rod protein Ype Yersinia pestis
          Length = 134

 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 105/134 (78%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGDVKDS 60
           MSL NIF++AGSA+SAQ+QR+N +ASN+ANADS T PDG PY+AKQVVFQ       +  
Sbjct: 1   MSLLNIFDIAGSALSAQSQRMNVSASNLANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPLADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GV+VA +V+D +P +LVY P +PLAD  GYV MPNV+   EMVN ISASRSYQ NVE +N
Sbjct: 61  GVRVAQIVDDPSPDRLVYQPGNPLADAKGYVRMPNVDVTGEMVNTISASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K++++KTLT+GQ
Sbjct: 121 TTKSLMLKTLTLGQ 134