BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1892.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0341 [NO] COG1261 Flagellar basal body P-ring biosynthesis pr... 137 2e-32 STM1173 [NO] COG1261 Flagellar basal body P-ring biosynthesis pr... 97 4e-20 flgA [NO] COG1261 Flagellar basal body P-ring biosynthesis prote... 88 2e-17 ZflgA [NO] COG1261 Flagellar basal body P-ring biosynthesis prot... 88 2e-17 ECs1450 [NO] COG1261 Flagellar basal body P-ring biosynthesis pr... 88 2e-17 >RSp0341 [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Rso Ralstonia solanacearum Length = 295 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 112/189 (59%) Query: 66 TSGLPGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTTVGVKCIAPSPWTIYLRAN 125 T G +V + DPR+ C + + +P RL GR VGV+C +P W ++ A Sbjct: 107 TDGGGSRASVDVGAVDPRVANQPCDQVELMLPPANRLRGRIQVGVRCRSPHAWAAWVPAT 166 Query: 126 VQVISDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTEESQAIGRVANMSLRAGTP 185 +Q+ Y VAA L G+T+ D+ GD+SALP V+ + + A+GRV SL P Sbjct: 167 IQISGTYYVAARQLPPGKTLDMGDLEARTGDLSALPPSVILQPADAVGRVLLTSLAPNQP 226 Query: 186 LRMDTIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEGQMAQARTAAGQVVSGIAK 245 LR +++R VQ GQ V++V++G GFQ++++ RAL A GQ+AQ RTA G V+SGIA+ Sbjct: 227 LRAESLRMPIAVQAGQTVKLVADGGGFQVTSDGRALNQAAVGQVAQVRTANGNVISGIAQ 286 Query: 246 AGGILEINY 254 + G++ + + Sbjct: 287 SAGVVAVQF 295 >STM1173 [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Sty Salmonella typhimurium LT2 Length = 219 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 5/193 (2%) Query: 61 FLKSQTSGLPGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTTVGVKCIAPSPWTI 120 + + +G V VT+ + P L L SC +P M +L+G V +C Sbjct: 31 WFSQRLAGFSDEVVVTLR-SSPNL-LPSCEQPAFSMTGSAKLWGNVNVVARCANEKR--- 85 Query: 121 YLRANVQVISDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTEESQAIGRVANMSL 180 YL+ NVQ +Y+ A P+A+G ++ +++T RG + LP + + Q V+ L Sbjct: 86 YLQVNVQATGNYVAVAAPIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDL 145 Query: 181 RAGTPLRMDTIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEGQMAQARTAAGQVV 240 G P+++ IR V+ GQ V+V++NG GF ++ E +A+ NA Q A+ R +GQ+V Sbjct: 146 APGQPVQLTMIRQAWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIV 205 Query: 241 SGIAKAGGILEIN 253 SG + G + IN Sbjct: 206 SGTVDSDGNILIN 218 >flgA [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Eco Escherichia coli K12 Length = 219 Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 5/195 (2%) Query: 59 EQFLKSQTSGLPGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTTVGVKCIAPSPW 118 F +Q +G+ V V+I A P L L C +P M N RL+G V +C Sbjct: 29 HNFFSAQLAGVSDEVRVSIRTA-PNL-LPPCEQPLLSMSNNSRLWGNVNVLARCGNDKR- 85 Query: 119 TIYLRANVQVISDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTEESQAIGRVANM 178 YL+ NVQ +Y+VAA+P+A+G + A ++ RG + LP + + +Q + ++ Sbjct: 86 --YLQVNVQATGNYVVAAMPIARGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLR 143 Query: 179 SLRAGTPLRMDTIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEGQMAQARTAAGQ 238 L P+++ R V+ GQ V V+++G GF + E +AL NA Q A+ R +GQ Sbjct: 144 DLSPDQPIQLTQFRQAWRVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGQ 203 Query: 239 VVSGIAKAGGILEIN 253 VVSG+ A G + IN Sbjct: 204 VVSGVVDADGNILIN 218 >ZflgA [NO] COG1261 Flagellar basal body P-ring biosynthesis protein EcZ Escherichia coli O157:H7 EDL933 Length = 219 Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 5/195 (2%) Query: 59 EQFLKSQTSGLPGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTTVGVKCIAPSPW 118 + F SQ +G+ V V+I A P L L C +P M N RL+G V +C Sbjct: 29 QTFFSSQLAGISDEVRVSIRTA-PNL-LPPCEQPLLSMSNNSRLWGNVNVLARCGNDKR- 85 Query: 119 TIYLRANVQVISDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTEESQAIGRVANM 178 YL+ NVQ +Y+VAA+P+ +G + A ++ RG + LP + + +Q + V+ Sbjct: 86 --YLQVNVQATGNYVVAAMPIVRGGKLGAGNVKLKRGRLDTLPPRTVLDINQLVDAVSLR 143 Query: 179 SLRAGTPLRMDTIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEGQMAQARTAAGQ 238 L P+++ R V+ GQ V V+++G GF + E +AL NA Q A+ R +GQ Sbjct: 144 DLSPDQPIQLTQFRQAWRVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGQ 203 Query: 239 VVSGIAKAGGILEIN 253 VVSG+ A G + IN Sbjct: 204 VVSGVVDADGNILIN 218 >ECs1450 [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Ecs Escherichia coli O157:H7 Length = 219 Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 5/195 (2%) Query: 59 EQFLKSQTSGLPGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTTVGVKCIAPSPW 118 + F SQ +G+ V V+I A P L L C +P M N RL+G V +C Sbjct: 29 QTFFSSQLAGISDEVRVSIRTA-PNL-LPPCEQPLLSMSNNSRLWGNVNVLARCGNDKR- 85 Query: 119 TIYLRANVQVISDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTEESQAIGRVANM 178 YL+ NVQ +Y+VAA+P+ +G + A ++ RG + LP + + +Q + V+ Sbjct: 86 --YLQVNVQATGNYVVAAMPIVRGGKLGAGNVKLKRGRLDTLPPRTVLDINQLVDAVSLR 143 Query: 179 SLRAGTPLRMDTIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEGQMAQARTAAGQ 238 L P+++ R V+ GQ V V+++G GF + E +AL NA Q A+ R +GQ Sbjct: 144 DLSPDQPIQLTQFRQAWRVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGQ 203 Query: 239 VVSGIAKAGGILEIN 253 VVSG+ A G + IN Sbjct: 204 VVSGVVDADGNILIN 218