BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1884.p (216 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1401 Non COG 198 7e-51 RSc0742 Non COG 184 1e-46 ZcheZ [NT] COG3143 Chemotaxis protein EcZ Escherichia coli O157:... 181 1e-45 ECs2591 [NT] COG3143 Chemotaxis protein Ecs Escherichia coli O15... 181 1e-45 cheZ [NT] COG3143 Chemotaxis protein Eco Escherichia coli K12 181 1e-45 >RSp1401 Non COG Length = 220 Score = 198 bits (504), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 103/197 (52%), Positives = 137/197 (69%), Gaps = 1/197 (0%) Query: 21 EVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATEL 80 ++L RIGH+TR LH+S+R LG D+ +EKAAS +PDARDRL Y+A MTEQAA RVLNA + Sbjct: 24 DMLQRIGHLTRMLHESMRELGLDKGVEKAASAIPDARDRLNYIANMTEQAATRVLNAIDA 83 Query: 81 ASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDI 140 A P+Q+++ A EL +W + + + R+L T+ FL + + T QL++I Sbjct: 84 ARPVQDQLEGEAEELVTRWQSWMDRQLGDDEIRSLVEITNGFLRSVPQKTRDTNHQLMEI 143 Query: 141 MMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSETKREDG-GLLNGPQIDPAGKD 199 +MAQDFQDLTGQVIK+V + +ESQLV +L+D +P + E G LLNGPQI+P D Sbjct: 144 LMAQDFQDLTGQVIKKVLDVVQLIESQLVGILLDNAPEHLRVEVGSSLLNGPQINPDHPD 203 Query: 200 VIANQGQVDDLLESLGF 216 V+ANQ QVDDLL SLGF Sbjct: 204 VVANQEQVDDLLASLGF 220 >RSc0742 Non COG Length = 217 Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/197 (50%), Positives = 132/197 (67%), Gaps = 1/197 (0%) Query: 21 EVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATEL 80 ++L RIG++TR L +SLR LG D+ +E+AAS +PDARDRL YVA MTEQAA R LNA + Sbjct: 21 DMLQRIGYLTRMLRESLRELGLDKGIERAASAIPDARDRLNYVANMTEQAAMRALNAIDA 80 Query: 81 ASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDI 140 A P+Q+ + A L +W A S+ + R L +T FL + + T QQL++I Sbjct: 81 ARPVQDALAGEAEALVRRWQAWMDRRLSDEEIRDLVGETRGFLRDVPQKTRDTNQQLMEI 140 Query: 141 MMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSETKREDG-GLLNGPQIDPAGKD 199 +MAQDFQDLTGQVIK+V L +E++L+ +L D +P+ E LLNGPQ++P D Sbjct: 141 LMAQDFQDLTGQVIKKVLDLIQFIETELIGILTDNAPAHRSAEVAPTLLNGPQVNPDPPD 200 Query: 200 VIANQGQVDDLLESLGF 216 V+A Q QVDDLLESLGF Sbjct: 201 VVAGQEQVDDLLESLGF 217 >ZcheZ [NT] COG3143 Chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 214 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/199 (49%), Positives = 131/199 (65%), Gaps = 3/199 (1%) Query: 21 EVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATEL 80 +++ RIG +TR L DSLR LG D+ + +AA +PDARDRL YV +MT QAA+R LN+ E Sbjct: 16 DIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEA 75 Query: 81 ASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDI 140 + P Q+++ A L +WD A AD R L T FLA +S T QLL+I Sbjct: 76 SQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRKFLADVPAHTSFTNAQLLEI 135 Query: 141 MMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSP---SETKREDGGLLNGPQIDPAG 197 MMAQDFQDLTGQVIKR+ + ++E QL+ +L++ P S KRE+ LLNGPQ+D + Sbjct: 136 MMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSK 195 Query: 198 KDVIANQGQVDDLLESLGF 216 V+A+Q QVDDLL+SLGF Sbjct: 196 AGVVASQDQVDDLLDSLGF 214 >ECs2591 [NT] COG3143 Chemotaxis protein Ecs Escherichia coli O157:H7 Length = 214 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/199 (49%), Positives = 131/199 (65%), Gaps = 3/199 (1%) Query: 21 EVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATEL 80 +++ RIG +TR L DSLR LG D+ + +AA +PDARDRL YV +MT QAA+R LN+ E Sbjct: 16 DIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEA 75 Query: 81 ASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDI 140 + P Q+++ A L +WD A AD R L T FLA +S T QLL+I Sbjct: 76 SQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRKFLADVPAHTSFTNAQLLEI 135 Query: 141 MMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSP---SETKREDGGLLNGPQIDPAG 197 MMAQDFQDLTGQVIKR+ + ++E QL+ +L++ P S KRE+ LLNGPQ+D + Sbjct: 136 MMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSK 195 Query: 198 KDVIANQGQVDDLLESLGF 216 V+A+Q QVDDLL+SLGF Sbjct: 196 AGVVASQDQVDDLLDSLGF 214 >cheZ [NT] COG3143 Chemotaxis protein Eco Escherichia coli K12 Length = 214 Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/199 (49%), Positives = 131/199 (65%), Gaps = 3/199 (1%) Query: 21 EVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATEL 80 +++ RIG +TR L DSLR LG D+ + +AA +PDARDRL YV +MT QAA+R LN+ E Sbjct: 16 DIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEA 75 Query: 81 ASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDI 140 + P Q+++ A L +WD A AD R L T FLA +S T QLL+I Sbjct: 76 SQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNAQLLEI 135 Query: 141 MMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSP---SETKREDGGLLNGPQIDPAG 197 MMAQDFQDLTGQVIKR+ + ++E QL+ +L++ P S KRE+ LLNGPQ+D + Sbjct: 136 MMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSK 195 Query: 198 KDVIANQGQVDDLLESLGF 216 V+A+Q QVDDLL+SLGF Sbjct: 196 AGVVASQDQVDDLLDSLGF 214