BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1883.p         (131 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1680 [T] COG0784 FOG Ype Yersinia pestis                           207   5e-54
RSp1402 [T] COG0784 FOG Rso Ralstonia solanacearum                    204   3e-53
STM1916 [T] COG0784 FOG Sty Salmonella typhimurium LT2                201   3e-52
cheY [T] COG0784 FOG Eco Escherichia coli K12                         200   7e-52
ZcheY [T] COG0784 FOG EcZ Escherichia coli O157:H7 EDL933             200   7e-52

>YPO1680 [T] COG0784 FOG Ype Yersinia pestis
          Length = 129

 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 113/127 (88%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+  N +FLVVDDFSTMRRIVRNLLKELG+ NV+EAEDGV AL KLR+  FDFVVSDWNM
Sbjct: 1   MADKNLRFLVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRAGGFDFVVSDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGL +L+ IR D AL+ LPVLMVTAEAKKENI+AAAQAGA+GYVVKPFTAATL+EKL
Sbjct: 61  PNMDGLDLLKTIRTDGALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120

Query: 121 GKIFEKM 127
            KIFEK+
Sbjct: 121 NKIFEKL 127


>RSp1402 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 133

 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/132 (76%), Positives = 111/132 (84%), Gaps = 2/132 (1%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M     +FLVVDDF TMRRIVRNLLKELG+ NVDEAEDG   L K++  +FDFV+SDWNM
Sbjct: 1   MDKSQYRFLVVDDFPTMRRIVRNLLKELGFANVDEAEDGAAGLAKVKEGRFDFVISDWNM 60

Query: 61  PNMDGLTMLQEIRKD--PALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDE 118
           PNMDGL MLQ IR D  P ++KLPVLMVTAEAKKENI+AAAQAGANGYVVKPFTAATLDE
Sbjct: 61  PNMDGLQMLQGIRADPNPGINKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDE 120

Query: 119 KLGKIFEKMAAG 130
           KLGKIFEK+  G
Sbjct: 121 KLGKIFEKIEKG 132


>STM1916 [T] COG0784 FOG Sty Salmonella typhimurium LT2
          Length = 129

 Score =  201 bits (512), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 111/127 (87%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+    KFLVVDDFSTMRRIVRNLLKELG+ NV+EAEDGV AL KL++  F F++SDWNM
Sbjct: 1   MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGL +L+ IR D A+S LPVLMVTAEAKKENI+AAAQAGA+GYVVKPFTAATL+EKL
Sbjct: 61  PNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120

Query: 121 GKIFEKM 127
            KIFEK+
Sbjct: 121 NKIFEKL 127


>cheY [T] COG0784 FOG Eco Escherichia coli K12
          Length = 129

 Score =  200 bits (508), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 111/127 (87%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+    KFLVVDDFSTMRRIVRNLLKELG+ NV+EAEDGV AL KL++  + FV+SDWNM
Sbjct: 1   MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGL +L+ IR D A+S LPVLMVTAEAKKENI+AAAQAGA+GYVVKPFTAATL+EKL
Sbjct: 61  PNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120

Query: 121 GKIFEKM 127
            KIFEK+
Sbjct: 121 NKIFEKL 127


>ZcheY [T] COG0784 FOG EcZ Escherichia coli O157:H7 EDL933
          Length = 129

 Score =  200 bits (508), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 111/127 (87%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+    KFLVVDDFSTMRRIVRNLLKELG+ NV+EAEDGV AL KL++  + FV+SDWNM
Sbjct: 1   MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGL +L+ IR D A+S LPVLMVTAEAKKENI+AAAQAGA+GYVVKPFTAATL+EKL
Sbjct: 61  PNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120

Query: 121 GKIFEKM 127
            KIFEK+
Sbjct: 121 NKIFEKL 127