BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1882.p (359 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1403 [NT] COG2201 Chemotaxis response regulator containing a ... 498 e-141 YPO1679 [NT] COG2201 Chemotaxis response regulator containing a ... 459 e-129 ECs2593 [NT] COG2201 Chemotaxis response regulator containing a ... 458 e-129 cheB [NT] COG2201 Chemotaxis response regulator containing a Che... 456 e-128 ZcheB [NT] COG2201 Chemotaxis response regulator containing a Ch... 456 e-128 >RSp1403 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Rso Ralstonia solanacearum Length = 381 Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust. Identities = 259/383 (67%), Positives = 293/383 (76%), Gaps = 33/383 (8%) Query: 3 KIKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRM 62 KI+VL +DDSALIRS+++EII +QPDMEVVGVAPDPIIAR+LIKQTNPDVLTLDVEMP+M Sbjct: 6 KIQVLCIDDSALIRSILKEIINAQPDMEVVGVAPDPIIARDLIKQTNPDVLTLDVEMPKM 65 Query: 63 DGLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADM 122 DGLDFLEKLMRLRP PVVM+SSLTERGSE TLRALELGA+DFV KPK+ ++ GM EYAD Sbjct: 66 DGLDFLEKLMRLRPTPVVMISSLTERGSEATLRALELGAVDFVAKPKLGMRDGMNEYADQ 125 Query: 123 IADKIRAAAKAR--------------------------VRARPSRSAEQATTSGEVLPQI 156 IADKIRAAA+AR V ARP A Sbjct: 126 IADKIRAAARARLRPRTASPAPAPAAASPAHAVHTAHAVHARPEHDAAAVPAPA------ 179 Query: 157 RNPLTSSEKLIIIGASTGGTEAIKEFLIRMPSDCPGILITQHMPEGFTRSFAQRLNNLCK 216 R +S+EKLII+GASTGGTEAIK+FL+ MP DCPGILI QHMP GFT SFA+RL+ LC+ Sbjct: 180 RTHFSSTEKLIIVGASTGGTEAIKDFLLEMPPDCPGILIVQHMPAGFTTSFAKRLDGLCR 239 Query: 217 ISVVESAGNERVLPGHAYIAPGHSHLKLVRSGANYMTQLDQGPPVNRHRPSVDVLFQSAA 276 I V E+ ERVLPGHAYIAPG HL L RSGANY+T+LDQ PPVNRHRP+VDVLF+SAA Sbjct: 240 IRVKEAVHGERVLPGHAYIAPGDMHLSLGRSGANYVTELDQNPPVNRHRPAVDVLFRSAA 299 Query: 277 TCAGKNAVGVILTGMGKDGAQGMLEMRNAGAYNFAQDEASCVVFGMPREAIAVGAAHEVL 336 AG NA+GVILTGMGKDGA GMLEMRNAGAYN AQDEASCVV+GMP+EA+A G HE+L Sbjct: 300 RNAGANALGVILTGMGKDGAAGMLEMRNAGAYNVAQDEASCVVYGMPKEAVAHGGVHEIL 359 Query: 337 SLQAMPGRVLAWLAEHGSRALRV 359 L + VLA L+ HG R RV Sbjct: 360 PLHQIGPHVLARLSAHG-RVTRV 381 >YPO1679 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Ype Yersinia pestis Length = 349 Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/357 (65%), Positives = 275/357 (77%), Gaps = 10/357 (2%) Query: 3 KIKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRM 62 KI+VL VDDSAL+R +M EII S PDME+V A DP++AR+LIK+ NP VLTLDVEMPRM Sbjct: 3 KIRVLCVDDSALMRQLMTEIINSHPDMEMVAAAQDPLVARDLIKKFNPQVLTLDVEMPRM 62 Query: 63 DGLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADM 122 DGLDFLEKLMRLRPMPVVMVSSLT + SEIT+RALELGAIDFVTKP++ I+ GM Y+++ Sbjct: 63 DGLDFLEKLMRLRPMPVVMVSSLTGKNSEITMRALELGAIDFVTKPQLGIREGMLAYSEL 122 Query: 123 IADKIRAAAKARVRARPSRSAEQATTSGEVLPQIRNPLTSSEKLIIIGASTGGTEAIKEF 182 IADKIR AAKAR+ P R E PL SSEKLI IGASTGGTEAI+ Sbjct: 123 IADKIRTAAKARL---PQRVLENKPAMLS-----HTPLLSSEKLIAIGASTGGTEAIRAV 174 Query: 183 LIRMPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHL 242 L +P P +LITQHMP GFTRSFA+RLN LC+I+V E+ ERVLPGHAYIAPG HL Sbjct: 175 LQPLPPTSPALLITQHMPPGFTRSFAERLNKLCQITVKEAEDGERVLPGHAYIAPGDRHL 234 Query: 243 KLVRSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEM 302 +L RSGANY ++ GP VNRHRPSVDVLF+S A AG+NAVGVILTGMG DGA G+LEM Sbjct: 235 ELARSGANYQVRIHDGPAVNRHRPSVDVLFRSVAQYAGRNAVGVILTGMGNDGAAGLLEM 294 Query: 303 RNAGAYNFAQDEASCVVFGMPREAIAVGAAHEVLSLQAMPGRVLAWLAEHGSRALRV 359 AGAY AQ+EASCVVFGMPREAIA+G ++V+ L + R+LA ++ +ALR+ Sbjct: 295 HRAGAYTLAQNEASCVVFGMPREAIAMGGVNDVVELNQISQRMLAQISS--GQALRI 349 >ECs2593 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Ecs Escherichia coli O157:H7 Length = 349 Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/357 (64%), Positives = 273/357 (76%), Gaps = 10/357 (2%) Query: 3 KIKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRM 62 KI+VL VDDSAL+R +M EII S DME+V APDP++AR+LIK+ NPDVLTLDVEMPRM Sbjct: 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRM 62 Query: 63 DGLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADM 122 DGLDFLEKLMRLRPMPVVMVSSLT +GSE+TLRALELGAIDFVTKP++ I+ GM Y++M Sbjct: 63 DGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEM 122 Query: 123 IADKIRAAAKARVRARPSRSAEQATTSGEVLPQIRNPLTSSEKLIIIGASTGGTEAIKEF 182 IA+K+R AAKA + A SA +G PL SSEKLI IGASTGGTEAI+ Sbjct: 123 IAEKVRTAAKASLAAHKPLSAPTTLKAG--------PLLSSEKLIAIGASTGGTEAIRHV 174 Query: 183 LIRMPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHL 242 L +P P +LITQHMP GFTRSFA RLN LC+I V E+ ERVLPGHAYIAPG H+ Sbjct: 175 LQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHM 234 Query: 243 KLVRSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEM 302 +L RSGANY ++ GP VNRHRPSVDVLF S A AG+NAVGVILTGMG DGA GML M Sbjct: 235 ELARSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAM 294 Query: 303 RNAGAYNFAQDEASCVVFGMPREAIAVGAAHEVLSLQAMPGRVLAWLAEHGSRALRV 359 R AGA+ AQ+EASCVVFGMPREAI +G EV+ L + ++LA ++ +A+R+ Sbjct: 295 RQAGAWTLAQNEASCVVFGMPREAINMGGVCEVVDLNQVSQQMLAKIS--AGQAIRI 349 >cheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Eco Escherichia coli K12 Length = 349 Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust. Identities = 232/357 (64%), Positives = 272/357 (76%), Gaps = 10/357 (2%) Query: 3 KIKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRM 62 KI+VL VDDSAL+R +M EII S DME+V APDP++AR+LIK+ NPDVLTLDVEMPRM Sbjct: 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRM 62 Query: 63 DGLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADM 122 DGLDFLEKLMRLRPMPVVMVSSLT +GSE+TLRALELGAIDFVTKP++ I+ GM Y +M Sbjct: 63 DGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYNEM 122 Query: 123 IADKIRAAAKARVRARPSRSAEQATTSGEVLPQIRNPLTSSEKLIIIGASTGGTEAIKEF 182 IA+K+R AAKA + A SA +G PL SSEKLI IGASTGGTEAI+ Sbjct: 123 IAEKVRTAAKASLAAHKPLSAPTTLKAG--------PLLSSEKLIAIGASTGGTEAIRHV 174 Query: 183 LIRMPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHL 242 L +P P +LITQHMP GFTRSFA RLN LC+I V E+ ERVLPGHAYIAPG H+ Sbjct: 175 LQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHM 234 Query: 243 KLVRSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEM 302 +L RSGANY ++ GP VNRHRPSVDVLF S A AG+NAVGVILTGMG DGA GML M Sbjct: 235 ELSRSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAM 294 Query: 303 RNAGAYNFAQDEASCVVFGMPREAIAVGAAHEVLSLQAMPGRVLAWLAEHGSRALRV 359 R AGA+ AQ+EASCVVFGMPREAI +G EV+ L + ++LA ++ +A+R+ Sbjct: 295 RQAGAWTLAQNEASCVVFGMPREAINMGGVCEVVDLSQVSQQMLAKIS--AGQAIRI 349 >ZcheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain EcZ Escherichia coli O157:H7 EDL933 Length = 349 Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust. Identities = 231/357 (64%), Positives = 272/357 (76%), Gaps = 10/357 (2%) Query: 3 KIKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRM 62 KI+VL VDDSAL+ +M EII S DME+V APDP++AR+LIK+ NPDVLTLDVEMPRM Sbjct: 3 KIRVLSVDDSALMXQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRM 62 Query: 63 DGLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADM 122 DGLDFLEKLMRLRPMPVVMVSSLT +GSE+TLRALELGAIDFVTKP++ I+ GM Y++M Sbjct: 63 DGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEM 122 Query: 123 IADKIRAAAKARVRARPSRSAEQATTSGEVLPQIRNPLTSSEKLIIIGASTGGTEAIKEF 182 IA+K+R AAKA + A SA +G PL SSEKLI IGASTGGTEAI+ Sbjct: 123 IAEKVRTAAKASLAAHKPLSAPTTLKAG--------PLLSSEKLIAIGASTGGTEAIRHV 174 Query: 183 LIRMPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHL 242 L +P P +LITQHMP GFTRSFA RLN LC+I V E+ ERVLPGHAYIAPG H+ Sbjct: 175 LQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHM 234 Query: 243 KLVRSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEM 302 +L RSGANY ++ GP VNRHRPSVDVLF S A AG+NAVGVILTGMG DGA GML M Sbjct: 235 ELARSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAM 294 Query: 303 RNAGAYNFAQDEASCVVFGMPREAIAVGAAHEVLSLQAMPGRVLAWLAEHGSRALRV 359 R AGA+ AQ+EASCVVFGMPREAI +G EV+ L + ++LA ++ +A+R+ Sbjct: 295 RQAGAWTLAQNEASCVVFGMPREAINMGGVCEVVDLNQVSQQMLAKIS--AGQAIRI 349