BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1881.p (201 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation ... 224 1e-58 PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation o... 221 9e-58 CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation o... 146 3e-35 VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation ... 138 6e-33 AGc918 [NT] COG1871 Chemotaxis protein stimulates methylation o... 137 1e-32 >RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Rso Length = 233 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 105/186 (56%), Positives = 139/186 (74%), Gaps = 1/186 (0%) Query: 4 ASEQIATNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNH 63 A +T+ YYD TF A K+LPGEYY TT+D+M+VTVLGSCVSAC+RD++ GIGGMNH Sbjct: 33 AQSAASTHAYYDTTFSRRAMKVLPGEYYVTTEDLMLVTVLGSCVSACVRDKLLGIGGMNH 92 Query: 64 FMLPDGGGDDGSPISASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAIN 123 FMLP + S +S S RYGT+AMEVL+N + ++GARRE+LE KVFGG VL G S ++ Sbjct: 93 FMLPSRNESE-SILSPSMRYGTHAMEVLLNQLYRAGARREHLEIKVFGGAAVLAGMSTLD 151 Query: 124 VGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREK 183 VGERN +FV +L++E + V A+DL D++PRKVYF P TG+++V+KL+ + +D E Sbjct: 152 VGERNGKFVLEFLRSEGLPVAAKDLFDVHPRKVYFVPSTGQIMVRKLRSQGSAAELDSEA 211 Query: 184 AYASKL 189 YASKL Sbjct: 212 QYASKL 217 >PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Pae Length = 200 Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 109/199 (54%), Positives = 143/199 (71%), Gaps = 2/199 (1%) Query: 3 QASEQIATNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMN 62 QA E N YYD F CDA K+LPGEY+ + +D++IVTVLGSCVS C+RD ++GI GMN Sbjct: 4 QAREGAPLNRYYDPYFACDAVKLLPGEYFASGEDLVIVTVLGSCVSVCLRDPLNGIAGMN 63 Query: 63 HFMLPDGGGDDGSPISASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAI 122 HFMLP+ G G P S SARYG++AME+LIN +L GA RE L+AKVFGGG+VLR SA Sbjct: 64 HFMLPE-RGLGGDPASPSARYGSHAMELLINRMLALGASRERLQAKVFGGGSVLRQISAA 122 Query: 123 NVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDRE 182 +G+RN EF YL E I ++A D+ + +PRK+YFFPR G+VLVK L ++ N+T++ RE Sbjct: 123 -IGQRNVEFTLDYLATERIPLLASDVLEAFPRKIYFFPRNGRVLVKSLVELKNDTVLQRE 181 Query: 183 KAYASKLVTKPVGGEVDLF 201 + Y ++ GG +DLF Sbjct: 182 RDYRRRIDRNADGGPIDLF 200 >CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Ccr Length = 187 Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/193 (42%), Positives = 113/193 (58%), Gaps = 8/193 (4%) Query: 10 TNLYYDRTFDCDAAKILPGEYYFTT-KDMMIVTVLGSCVSACIRDRVSGIGGMNHFMLPD 68 T+ ++D + GE + T ++++ TVLGSC++ACIRD SG+GGMNHF+LPD Sbjct: 2 TSFHHDDPERAVKVHVTQGESHVTADPNVVMTTVLGSCIAACIRDPQSGVGGMNHFLLPD 61 Query: 69 GGGDDGSPISASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVGERN 128 G DG + RYG YAMEVLIND+LK GARRE LEAK+FGG + G S +VG N Sbjct: 62 SG--DGRRDGDAVRYGAYAMEVLINDLLKRGARRERLEAKIFGGAKLFDGLS--DVGASN 117 Query: 129 AEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAYASK 188 A F R+L+ E I +V+ + R+V F+P +G+V + + + V R Sbjct: 118 AAFAERFLRDEGIPIVSSSTGGVSARRVEFWPASGRVRQRLVAVDNAPQDVRRPTPPPMP 177 Query: 189 LVTKPVGGEVDLF 201 V G+VDLF Sbjct: 178 AVAS---GDVDLF 187 >VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Vch Length = 233 Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 8/184 (4%) Query: 24 KILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFMLP------DGGGDDGSPI 77 K++PG Y T+ +I T LGSCVSAC D +GGMNHF+LP + + Sbjct: 51 KVMPGGVYATSDQEIIHTGLGSCVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALL 110 Query: 78 SASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVGERNAEFVRRYLK 137 S S+RYG YAMEVLIN +L GA RE L+ K+FGG +++ G+ ++ VGE+N EFV Y K Sbjct: 111 SDSSRYGCYAMEVLINRLLSMGAERERLKFKLFGGAHLM-GYQSL-VGEKNVEFVLEYAK 168 Query: 138 AENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAYASKLVTKPVGGE 197 E + VVA+DL PRK+ F P+TG+ VK++ + + E+ Y + + + Sbjct: 169 REKLNVVAQDLGGAQPRKLLFDPQTGQAWVKRIGFSSAHAIKQDEELYQHSIDKQIPSDD 228 Query: 198 VDLF 201 V+LF Sbjct: 229 VELF 232 >AGc918 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Atu Length = 181 Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 105/178 (58%), Gaps = 8/178 (4%) Query: 25 ILPGEYYFTT-KDMMIVTVLGSCVSACIRDRVSGIGGMNHFMLPDGGGDDGSPISASARY 83 I+ GEY + D+++ T+LGSCV+AC+RD V+G+GGMNHF+LP G G + RY Sbjct: 11 IIQGEYKVVSDPDVVMTTILGSCVAACLRDPVAGLGGMNHFLLPGTGNVTG---GDATRY 67 Query: 84 GTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVGERNAEFVRRYLKAENIRV 143 G + ME+LIN +LK GARR+ LEAKVFGG + FS NVGE+NA F ++LK E I V Sbjct: 68 GVHLMELLINGLLKQGARRDRLEAKVFGGAKTIASFS--NVGEQNAIFAMQFLKDEGIPV 125 Query: 144 VAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAYASKLVTKPVGGEVDLF 201 ++ + RK+ F+P +G+ L V E KPV +++ F Sbjct: 126 ISSSTGGDHGRKIEFWPVSGRARQHPLSGAETQKTVAMETRPVP--APKPVANDIEFF 181