BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1875.p         (80 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all4887 [E] COG1982 Arginine/lysine/ornithine decarboxylases Nos...    29   2.6  
mlr3880 Non COG                                                        29   3.0  

>all4887 [E] COG1982 Arginine/lysine/ornithine decarboxylases Nos Nostoc sp.
           PCC 7120
          Length = 488

 Score = 29.3 bits (64), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 3   SLVLMPALAAA---FALSGCVVTPPTVRPAYVAQPTYVAPPGVVYVQPTYASPGPGW 56
           S VL+ +L AA    ALSG  +   T++ A  A+      PG+  +QP   +P PG+
Sbjct: 263 SYVLLASLDAARQQMALSGKQLMSRTLQLANEARERISQIPGLSVLQPPTKTPSPGF 319


>mlr3880 Non COG
          Length = 288

 Score = 28.9 bits (63), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 32  AQPTYVAPPGVVY---VQPTYASPGPG 55
           A+PT VAP GV +   + P YAS  PG
Sbjct: 220 AKPTTVAPKGVTFPSAISPKYASETPG 246