BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1860.p (357 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2317 [M] COG1922 Teichoic acid biosynthesis proteins Cac Clos... 144 2e-34 VC0927 [M] COG1922 Teichoic acid biosynthesis proteins Vch Vibri... 117 5e-26 slr1118 [M] COG1922 Teichoic acid biosynthesis proteins Syn Syne... 111 3e-24 all4422 [M] COG1922 Teichoic acid biosynthesis proteins Nos Nost... 97 6e-20 TM0818 [M] COG1922 Teichoic acid biosynthesis proteins Tma Therm... 96 2e-19 >CAC2317 [M] COG1922 Teichoic acid biosynthesis proteins Cac Clostridium acetobutylicum Length = 250 Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 5/232 (2%) Query: 4 DRVSLQDAVRITGTAVERRQRCFLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMPLIW 63 D V++++A+ I ++ + ++ TPN++ + +D +F+ +DL + DGMPL+W Sbjct: 14 DNVNMKEAIEIIDGFIKDGKYHYVVTPNVDHIVRLEKDEEFKKVYENADLILTDGMPLVW 73 Query: 64 IARAIGLPINERVAGSSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASASGM 123 I++ + P+ E+V+GS LF R+ L A K V+ G GVA A E L A G+ Sbjct: 74 ISKWLKTPVKEKVSGSDLFP--RVCKL-AAEKEYTVFILGAAEGVAHKAGENLKAKYKGL 130 Query: 124 TAVGFDSPGFGSIEQMSDAASI-ERINASGADFLVVALGAKKGQAWIQHNLSRLRVPLIS 182 G SP FG ++ + I E IN D L V + A K + ++ L+VP+ Sbjct: 131 KVAGTYSPSFGFEKKPEEIKYIIEMINDIKPDILAVGVSAPKQEKFVAQYRDELKVPVAL 190 Query: 183 HLGAVVNFVAGTVSRAPTWAQKSGLEWLWRIKEEP-KLWRRYWDDGIGLLSL 233 +GA ++ AGT+ RAP W QKSGLEW +R+ +P K+++R + D + ++ + Sbjct: 191 AIGASIDIEAGTLKRAPLWMQKSGLEWFYRMFRQPKKIFKRVFFDDLKIIGI 242 >VC0927 [M] COG1922 Teichoic acid biosynthesis proteins Vch Vibrio cholerae Length = 250 Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 8/223 (3%) Query: 2 PFDRVSLQDAVRITGTAVERRQRCFLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMPL 61 P D S+ + V + + R++ N+ + +DP+ SV + D+ DGM + Sbjct: 15 PMDVASMSETVALIRDRILRQEFTQHVVVNVAKLVNMRKDPELAQSVTECDIINIDGMGV 74 Query: 62 IWIARAIGLPINERVAGSSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASAS 121 +W AR +G + ERVAG LF L L + A + M V++ G + + + + A Sbjct: 75 VWGARFLGHQVPERVAGVDLF--LELNAM-AAQEQMPVFYLGAKQEIVEKTAAVMQAKHP 131 Query: 122 GMTAVGFDSPGFGSIEQMSDAASIERINASGADFLVVALGAKKGQAWIQHNLSRLRVPLI 181 + G+ F EQ A +E+I SGA L VA+ + K + +I +L V + Sbjct: 132 QLVIAGYHHGYFWDDEQ----AIVEKIRQSGAKLLFVAITSPKKENFINRWQEQLGVLFV 187 Query: 182 SHLGAVVNFVAGTVSRAPTWAQKSGLEWLWRIKEEP-KLWRRY 223 +G + VAG VSRAP W QK+GLEWL+R+ +EP ++W+RY Sbjct: 188 MGVGGTFDVVAGHVSRAPLWMQKAGLEWLYRVLQEPGRMWKRY 230 >slr1118 [M] COG1922 Teichoic acid biosynthesis proteins Syn Synechocystis Length = 251 Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 8/223 (3%) Query: 5 RVSLQDAVRITGTAVERRQRC---FLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMPL 61 R+ D + T T + + ++ N++ ++ + ++ + Q+ L DGMPL Sbjct: 11 RIDCTDYGQATATIINLAKAAIASYVVAANVHVVMSAYGNKSYQEIINQAVLVTPDGMPL 70 Query: 62 IWIARAIGLPINERVAGSSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASAS 121 +W + +G P RV G L + A A+ + +Y +GG Q L Sbjct: 71 VWGLKLLGYPQATRVYGPDLMLTI---CQRAAAENLGIYLYGGTEDCLQQLKVNLIKRFP 127 Query: 122 GMTAVGFDSPGFGSIEQMSDAASIERINASGADFLVVALGAKKGQAWIQHNLSRLRVPLI 181 + VG DSP F +E + ++ +I SGA L V LG K + W+ ++ ++ + ++ Sbjct: 128 KLKIVGADSPPFRPLEPEEEKNALAKIKQSGAGILFVGLGCPKQEIWMANHYQKIDLVMV 187 Query: 182 SHLGAVVNFVAGTVSRAPTWAQKSGLEWLWRIKEEPK-LWRRY 223 +GA NF +G VS+AP W GLEWL+R++ EPK LWRRY Sbjct: 188 G-VGAAFNFHSGLVSQAPRWLMAMGLEWLYRLRMEPKRLWRRY 229 >all4422 [M] COG1922 Teichoic acid biosynthesis proteins Nos Nostoc sp. PCC 7120 Length = 257 Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 6/242 (2%) Query: 4 DRVSLQDAVRITGTAVERRQRCFLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMPLIW 63 D +S+ + + G ++E+ ++ ++ NL+ +D + + +++ D MP+++ Sbjct: 15 DALSIPELNCLIGESIEQGKKWIIANHNLHSLYLFHKDLEMQAFYAKAEYIHIDSMPIVF 74 Query: 64 IARAIGLPIN--ERVAGSSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASAS 121 I + +G P+ +RV + L A K R+++ G PGVA+ + L Sbjct: 75 IGKLLGFPMKREQRVTYADWVWPL---MEEAANKSWRIFYLGSKPGVAEQGAVILRRKFP 131 Query: 122 GMTAVGFDSPGFGSIEQMSDAASIERINASGADFLVVALGAKKGQAWIQHNLSRLRVPLI 181 G+ S E + I+ IN L+V +G + + WI NL R++ I Sbjct: 132 GLKIACSHGYFDTSEESEENLTVIKAINDYKPHVLMVGMGMPRQEHWISQNLERIQPNAI 191 Query: 182 SHLGAVVNFVAGTVSRAPTWAQKSGLEWLWRIKEEP-KLWRRYWDDGIGLLSLLLQRVIP 240 GA +++VAG + P W + GLEWL+R+ EP +LWRRY + L +L L+ + Sbjct: 192 LTSGACLDYVAGAIPTPPRWMGRMGLEWLYRLLTEPTRLWRRYLLEPWFLGTLFLREIWS 251 Query: 241 LA 242 L+ Sbjct: 252 LS 253 >TM0818 [M] COG1922 Teichoic acid biosynthesis proteins Tma Thermotoga maritima Length = 274 Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 8/199 (4%) Query: 19 VERRQRCFLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMPLIWIARAIGLPINERVAG 78 +E+ + F+ T N + + +ED +R V +DL + DG ++W + + ER+ G Sbjct: 58 IEKNIKTFVVTMNASILLKAIEDAGYRAIVNSADLVVPDGFGVVWAMKTLTGETTERLPG 117 Query: 79 SSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASASGMTAVGFDSPGFGSIEQ 138 + + L + G K VY G + + A + L SG+ VG G + Sbjct: 118 VEIMKHLCERSKEKGWK---VYLLGTKREIVEKAKQVL--ERSGVRVVGCHD---GFFSE 169 Query: 139 MSDAASIERINASGADFLVVALGAKKGQAWIQHNLSRLRVPLISHLGAVVNFVAGTVSRA 198 +E +N S D L V +G + + WI N +L V L +G ++ V+G RA Sbjct: 170 KESPKIVEDVNRSSTDLLFVGMGVPRQEEWIYRNFPQLNVKLAMGVGGSIDVVSGKKKRA 229 Query: 199 PTWAQKSGLEWLWRIKEEP 217 P W Q+ LEWL+R + P Sbjct: 230 PEWVQRMNLEWLYRFFQSP 248