BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1849.p         (322 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3181 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Rso ...    39   0.014
RSp1534 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Rso ...    39   0.021
DR0071 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Dra D...    36   0.12 
Ta0830 [R] COG0596 Predicted hydrolases or acyltransferases (alp...    33   0.85 
Rv1857 [P] COG0725 ABC-type molybdate transport system, periplas...    32   1.4  

>RSc3181 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Rso Ralstonia
           solanacearum
          Length = 281

 Score = 39.3 bits (90), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 43  VVANVDGQEITIHQVNNELAKTGG---TEVTKQLLDGLVARQLLV-NAAKKDKLDADPAV 98
           VVA V+G  IT  Q++  +A++G     +V + L   L+AR+L    AAK    D  PAV
Sbjct: 35  VVALVNGTRITQEQLDRAIAQSGAQANPQVAQALKQQLIARELFRQQAAKNPAYDKLPAV 94

Query: 99  LADMERARNLVLAQSYVASKLKAPTRPLDQEVEDLY 134
              M+ A + V+ Q+++   +K P    +++V+  Y
Sbjct: 95  KQAMQEAHDAVITQAWLKDNIK-PAPITEEQVKARY 129


>RSp1534 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Rso Ralstonia
           solanacearum
          Length = 282

 Score = 38.5 bits (88), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 43  VVANVDGQEITIHQVNNELAKTG---GTEVTKQLLDGLVARQLLV-NAAKKDKLDADPAV 98
           V+A V+G  IT  Q++  +A++G     +V + L   L+AR+L    AAK    D  PAV
Sbjct: 35  VIALVNGTRITQEQLDRAIAQSGVQANPQVAQALKQQLIARELFRQQAAKNPAYDKLPAV 94

Query: 99  LADMERARNLVLAQSYVASKLKAPTRPLDQEVEDLY 134
              M+ A + V+ Q+++   +K P    +++V+  Y
Sbjct: 95  KQAMQEAHDAVITQAWLKDNIK-PAPITEEQVKARY 129


>DR0071 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Dra Deinococcus
           radiodurans
          Length = 677

 Score = 35.8 bits (81), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 198 ADLPPQMNASLKNMERGSLFVVIE--GPTAILTSVQDVKSTPLSLAVATPQIVQYLVTQK 255
           A LP  +  +   ++ G L  VIE  G   I+   + +   P +   A   +V  +  QK
Sbjct: 266 AALPTAVGEAAFRLKNGGLTDVIESGGKFYIVKVEKFLPGQPKTFEQAKTDVVSAVRQQK 325

Query: 256 QNQASEQLVENLRKDAKIEYSD 277
           QN A E+  ++LRK+A++EY D
Sbjct: 326 QNAALEKWSDDLRKNAQVEYVD 347


>Ta0830 [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily) Tac Thermoplasma acidophilum
          Length = 293

 Score = 33.1 bits (74), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 141 FAQRKQYEFAQLIIAGS-NLTP----ELNALMDQ-PGKRLDDVAAWLDA---------HH 185
           +A + Q     LI++G  +  P    E+N L+D+ P K  D +  +  +           
Sbjct: 114 YAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEA 173

Query: 186 VQFTRQQVIKTTADLPPQMNASLKNMERGSLFVVIEGPT--AILTSVQDVKSTPLSLAVA 243
           V +   Q +  + D PP++  SL+  ER +++ ++ GP    I  +++D   T    A+ 
Sbjct: 174 VNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIK 233

Query: 244 TPQIV 248
            P ++
Sbjct: 234 IPTLI 238


>Rv1857 [P] COG0725 ABC-type molybdate transport system, periplasmic
          component Mtu Mycobacterium tuberculosis H37Rv
          Length = 261

 Score = 32.3 bits (72), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/21 (71%), Positives = 16/21 (76%)

Query: 19 LVSAMLLIGLVACGEKKSASS 39
          LVSAML+ GLVACG    ASS
Sbjct: 10 LVSAMLVAGLVACGSNSPASS 30