BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1839.p         (120 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1580 [J] COG0292 Ribosomal protein L20 Rso Ralstonia solanace...   207   5e-54
NMA0932 [J] COG0292 Ribosomal protein L20 NmA Neisseria meningit...   166   1e-41
VCA0290 [J] COG0292 Ribosomal protein L20 Vch Vibrio cholerae         165   2e-41
NMB0723 [J] COG0292 Ribosomal protein L20 Nme Neisseria meningit...   165   3e-41
PA2741 [J] COG0292 Ribosomal protein L20 Pae Pseudomonas aeruginosa   163   7e-41

>RSc1580 [J] COG0292 Ribosomal protein L20 Rso Ralstonia solanacearum
          Length = 118

 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 110/118 (93%)

Query: 1   MPRVKRGVTARARHKKVLALAKGYRGRRKNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60
           MPRVKRGVTARARHKKV+  AKGYRGRR NVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKANIA 118
           WIARINA AR HG++YS FMNGLKKA+IELDRKVL+DMA+ DK AFAAIVNQVKAN+A
Sbjct: 61  WIARINAGAREHGLSYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVNQVKANVA 118


>NMA0932 [J] COG0292 Ribosomal protein L20 NmA Neisseria meningitidis Z2491
          Length = 119

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 106/119 (89%)

Query: 1   MPRVKRGVTARARHKKVLALAKGYRGRRKNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60
           MPRVKRGVTARARH+K+ ALAKGYRGRRKNVYR+AKQAVM+AGQYAYRDRR +KR FR L
Sbjct: 1   MPRVKRGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQL 60

Query: 61  WIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKANIAA 119
           WI RINA AR +G++YS FMNGLK+A+IE+DRKVLAD+AV DKAAFA +V + KA +AA
Sbjct: 61  WIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAALAA 119


>VCA0290 [J] COG0292 Ribosomal protein L20 Vch Vibrio cholerae
          Length = 117

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 98/117 (83%)

Query: 1   MPRVKRGVTARARHKKVLALAKGYRGRRKNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60
           MPRVKRGV ARARHKKVL  AKGY G R  VYR+A QAV++AGQYAYRDRR KKR FR L
Sbjct: 1   MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRAKKRQFRQL 60

Query: 61  WIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKANI 117
           WIARINAAAR +G++YS F+NGLKKA+IE+DRK+LAD+AV DKAAFA +V + K  +
Sbjct: 61  WIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAKGAL 117


>NMB0723 [J] COG0292 Ribosomal protein L20 Nme Neisseria meningitidis MC58
          Length = 119

 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 105/119 (88%)

Query: 1   MPRVKRGVTARARHKKVLALAKGYRGRRKNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60
           MPRVKRGVTARARH+K+ ALAKGYRGRRKNVYR+AKQAVM+AGQYAYRDRR +KR FR L
Sbjct: 1   MPRVKRGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQL 60

Query: 61  WIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKANIAA 119
           WI RINA  R +G++YS FMNGLK+A+IE+DRKVLAD+AV DKAAFA +V + KA +AA
Sbjct: 61  WIVRINAGTRENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAALAA 119


>PA2741 [J] COG0292 Ribosomal protein L20 Pae Pseudomonas aeruginosa
          Length = 118

 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 99/118 (83%)

Query: 1   MPRVKRGVTARARHKKVLALAKGYRGRRKNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60
           M RVKRGV AR RHKK+L LAKGY G R  V+R+AKQAV++AGQYAYRDRR +KR FRAL
Sbjct: 1   MARVKRGVIARRRHKKILKLAKGYYGARSRVFRVAKQAVIKAGQYAYRDRRQRKRQFRAL 60

Query: 61  WIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKANIA 118
           WIARINA AR +G++YS  + GLKKAAIE+DRKVLAD+AV +KAAF AIV + KA++A
Sbjct: 61  WIARINAGARQNGLSYSRLIAGLKKAAIEIDRKVLADLAVNEKAAFTAIVEKAKASLA 118