BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1829.p         (132 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc04269 [S] COG1598 Uncharacterized conserved protein Sme Sinor...    89   2e-18
mlr2150 [S] COG1598 Uncharacterized conserved protein Mlo Mesorh...    86   2e-17
YPO1817 [S] COG1598 Uncharacterized conserved protein Ype Yersin...    82   4e-16
YPO3369 [S] COG1598 Uncharacterized conserved protein Ype Yersin...    74   7e-14
CC3185 [S] COG1598 Uncharacterized conserved protein Ccr Cauloba...    72   3e-13

>SMc04269 [S] COG1598 Uncharacterized conserved protein Sme Sinorhizobium
           meliloti
          Length = 153

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 7/129 (5%)

Query: 3   YPIYVHKDAHSAYGATFPDFPGCFAGADELQLLPAAAQEAVEAHFHG---EAEPIPSPSA 59
           Y   +HKDA S YG +FPDF G      +L    A A+EA+  H  G   + E IP PS+
Sbjct: 4   YIGLIHKDAESDYGVSFPDFSGVVTAGADLDDARAMAEEALALHIEGLVEDGEAIPEPSS 63

Query: 60  PEDWADDEHFQGGYWMLVEIDLSRVNAK-AVRLNVSLPQGLVTRIDAVAQARRMSRSAFL 118
            E    D   +    +LV +   +  AK A+R+NV+LP+G++ +IDA A+A  ++RS FL
Sbjct: 64  LEVVMSDAENRDCVAILVAV---KTEAKRAIRVNVTLPEGVLKQIDAFAEAHGLTRSGFL 120

Query: 119 ALAAEHEMQ 127
           A AA HE++
Sbjct: 121 ARAATHEIE 129


>mlr2150 [S] COG1598 Uncharacterized conserved protein Mlo Mesorhizobium
           loti
          Length = 133

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 7/129 (5%)

Query: 3   YPIYVHKDAHSAYGATFPDFPGCFAGADELQLLPAAAQEAVEAHFHG---EAEPIPSPSA 59
           Y   +HKDA S +G +FPDFPG      +L    + A+EA+  H  G   + E IP PS+
Sbjct: 4   YIGLIHKDAGSDFGVSFPDFPGVITAGKDLDDARSMAEEALTLHIEGLVEDGEAIPEPSS 63

Query: 60  PEDWADDEHFQGGYWMLVEIDLSRVNA-KAVRLNVSLPQGLVTRIDAVAQARRMSRSAFL 118
            +    D   + G  +LV    ++  A KAVR+NV+LP  ++ RIDA A+A   +RS FL
Sbjct: 64  LQAVMADADNRDGVAILVA---AKTEARKAVRINVTLPDDVLRRIDAFAEAHGYTRSGFL 120

Query: 119 ALAAEHEMQ 127
           A AAE  M+
Sbjct: 121 AKAAEKAME 129


>YPO1817 [S] COG1598 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 139

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 18/139 (12%)

Query: 2   LYPIYVHKDAHSAYGATFPDFPGCFAGADELQLLPAAAQEAVEAHFHG-EAEPIPSPSA- 59
           +YP YVH D   +    FPD  GC    +  + L A A  A++AHF    +E I  P A 
Sbjct: 3   IYPAYVHVDNDGSASGYFPDVKGCIFAINAGEDLFAEASSALDAHFEALVSEGIEIPEAH 62

Query: 60  ---------PEDWADDEHFQGGYWMLVEIDLSRVNAKAVRLNVSLPQGLVTRIDAVAQAR 110
                    P D+AD     GG W  V ID+S+ + K  R+NV+LP  L+ +ID + + R
Sbjct: 63  DMPYHVYRNPCDYAD-----GGQWYNVNIDMSKYDGKVERINVTLPHRLIHQIDTIVKVR 117

Query: 111 --RMSRSAFLALAAEHEMQ 127
               SRS FLA AA  E+Q
Sbjct: 118 PEYASRSNFLAEAARKELQ 136


>YPO3369 [S] COG1598 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 135

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 9/134 (6%)

Query: 1   MLYPIYVHKDAHSAYGATFPDFPGCFAGADELQLLPAAAQEAVEAHFH---GEAEPIPSP 57
           M+YPI++ K     +   FPD  GCF   +    +   A+EA   H      E  P+PSP
Sbjct: 1   MIYPIFIFKTVE-GFDGYFPDIDGCFFAGNTFADISKNAEEAFAVHIEALMNEGFPLPSP 59

Query: 58  -SAPEDWADDEHF--QGGYWMLVEIDLSRVNAKAVRLNVSLPQGLVTRIDAVAQARR--M 112
              P  + DD     +GG    VEID ++  +KAV+ N+++ Q L+T ID      R   
Sbjct: 60  PKDPHRYIDDPRLKEEGGILGFVEIDPAKYESKAVKFNLTMSQNLLTAIDKFIATNRGYK 119

Query: 113 SRSAFLALAAEHEM 126
           +RS FLA  A  ++
Sbjct: 120 NRSQFLAELAREKI 133


>CC3185 [S] COG1598 Uncharacterized conserved protein Ccr Caulobacter
           vibrioides
          Length = 131

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 5/129 (3%)

Query: 3   YPIYVHKDAHSAYGATFPDFPGCFAGADELQLLPAAAQEAVEAHFHG---EAEPIPSPSA 59
           Y   +HKDA SA+G +FPD PGC +  + L+   A A+EA+  H  G   + E +P+PSA
Sbjct: 4   YIALIHKDADSAFGVSFPDLPGCISVGETLEEARANAEEALALHVEGMIEDGETLPAPSA 63

Query: 60  PEDWADDEHFQGGYWMLVEIDLSRVNAKAVRLNVSLPQGLVTRIDAVAQARRMSRSAFLA 119
            ++       + G  +LV   L  V  + VR+N++LP+  +  IDA A+    +RS  LA
Sbjct: 64  LDEVMAAPGNRDGVVILVP--LKTVQPRTVRVNITLPETTLREIDAFAETYGYTRSGLLA 121

Query: 120 LAAEHEMQA 128
            AA+  + A
Sbjct: 122 RAAKQMIDA 130