BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1821.p         (323 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll9509 [T] COG3706 Response regulator containing a CheY-like re...   147   3e-35
sll1673_3 [T] COG2199 FOG Syn Synechocystis                           137   2e-32
RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum                  135   1e-31
all2874 [T] COG3706 Response regulator containing a CheY-like re...   133   5e-31
PA3702 [T] COG3706 Response regulator containing a CheY-like rec...   132   1e-30

>mll9509 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Mlo Mesorhizobium loti
          Length = 354

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 109/177 (61%), Gaps = 4/177 (2%)

Query: 143 EKMLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQY 202
           ++ L S +  L+R    DGLTG+ NRR+FDE+ A   +RA      LSL MID D FK+Y
Sbjct: 175 QRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRY 234

Query: 203 NDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALRQ 262
           ND YGH AGD VLK +A  +     +  DL ARYGGEEF++++ D   E+++ + + L Q
Sbjct: 235 NDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQ 294

Query: 263 AVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAKLGGRNKV 319
            V +L+ PH       RVTISVGV T V  E+E     + AAD AL+RAK  GRN+V
Sbjct: 295 GVRELNIPHGPD----RVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRV 347


>sll1673_3 [T] COG2199 FOG Syn Synechocystis
          Length = 176

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 107/176 (60%)

Query: 146 LRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQYNDH 205
           L++ ++ L+  A  DGLT I NRR FDE+ AQ  QR   +   LSL ++D+D+FK YND 
Sbjct: 1   LQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDL 60

Query: 206 YGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALRQAVY 265
           YGH  GD  L+ VA  L    ++  DL+ARYGGEEF++++ +   + A  + + + QA+ 
Sbjct: 61  YGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIA 120

Query: 266 QLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAKLGGRNKVVA 321
            L  PH  S V   VTIS+GV + +   ++    +++ AD ALY AK  GRN+ +A
Sbjct: 121 ALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAIA 176


>RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 177

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 3/166 (1%)

Query: 157 AGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQYNDHYGHGAGDHVLK 216
           A TD LTG+ NRR  DE      +RA  +   LS+ MIDVD FK YNDHYGH  GD  L+
Sbjct: 12  AATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYGHPDGDAALQ 71

Query: 217 GVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALRQAVYQLDEPHAKSLV 276
            VA  ++  LR+PGDL ARYGGEEF +++     + A  + + +R+A+  L+ PHA+S  
Sbjct: 72  AVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVLNIPHARS-A 130

Query: 277 EHRVTISVGVCTRVVQEDEDGR--LLMAAADAALYRAKLGGRNKVV 320
              +T+S+G  +       + R   L  AADA LYRAK  GRN+ +
Sbjct: 131 STALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRTM 176


>all2874 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Nos Nostoc sp. PCC 7120
          Length = 330

 Score =  133 bits (335), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 102/175 (58%)

Query: 143 EKMLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQY 202
           ++ L + +  L+R    D LT + NRR F+E+ AQ  QR       LSL + DVDFFK Y
Sbjct: 133 QQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDVDFFKAY 192

Query: 203 NDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALRQ 262
           ND YGH AGD  L+ VA A+   + +P D++ARYGGEEF +++     + A  L  A+  
Sbjct: 193 NDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYPDGAIHLANAICT 252

Query: 263 AVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAKLGGRN 317
           AV +L   H  S     VTIS GV T +   + D + ++ AAD ALY+AK+ GR+
Sbjct: 253 AVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRD 307


>PA3702 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Pae Pseudomonas aeruginosa
          Length = 347

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 2/202 (0%)

Query: 120 IDNHDGERLCLIQISDASNSVRR-EKMLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQA 178
           I  H    + L Q  +A  ++R  ++ L   +  L+R   +DGLTG+ NRRHFDE+    
Sbjct: 133 IRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEME 192

Query: 179 LQRAREQAGTLSLFMIDVDFFKQYNDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGG 238
            +R+  +   LSL MIDVD+FK YND +GH AGD  L+ VA A+R    +  DL ARYGG
Sbjct: 193 WRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGG 252

Query: 239 EEFILLMQDLTHEQAAELGQALRQAVYQLDEPHAKSLVEHRVTISVGVCTRVV-QEDEDG 297
           EEF +++   +   A  L + +R+ V  L   H +      +T+S+GV T V     +  
Sbjct: 253 EEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTF 312

Query: 298 RLLMAAADAALYRAKLGGRNKV 319
           R+L+  AD ALY+AK  GRN+V
Sbjct: 313 RVLIEMADQALYQAKNNGRNQV 334