BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1781.p (581 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3648 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58... 199 1e-50 aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus 155 2e-37 PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa 139 1e-32 PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa 139 2e-32 SMc01370 [T] COG3706 Response regulator containing a CheY-like r... 136 1e-31 >AGc3648 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 579 Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 175/553 (31%), Positives = 271/553 (49%), Gaps = 36/553 (6%) Query: 33 YRSGAKSVPGLHNLRLALLALERVSAERGSANAIMGASAQQAGDLQQKITRARNQTDAAL 92 YR+ A+ L+ AL + VSAERG AN +M A++ A L +++ AR TD L Sbjct: 38 YRTNAQQ---LNRFETALQSAWLVSAERGPANNLMAATSADAS-LVERLAVARKATDDKL 93 Query: 93 AALHGV----LEADARLRQSWAMDKVRTVEQGLGAARANVDHVARLAQQDRSDVLVLAAV 148 + + ++A RL +S A + Q L +R VD VA L + RS +A+ Sbjct: 94 SQVETSFAEEIKAQPRLAKSLAETR-----QKLAQSREAVDAVAALPAEARS----YSAM 144 Query: 149 ANMVDLIPPMIRVVSELGNEVDRA----DPSLRDGLAAVRATASLREYAGQVGSRFVAPL 204 AN + + V+ L + RA P + +A +R+ G++GS V L Sbjct: 145 ANAIQSMFTAADSVNLLRGKAARAIITKTPDVAIDIAMTGTAGVMRDRIGRLGSYVVMSL 204 Query: 205 IAHRQLTKDEVIEIGSLYGRIELLRNILAAQMATYSNSPEFAAAQDRMDKEYFDGAFQFL 264 A+RQ + + + L+++ L A Y ++P AA D YF + ++ Sbjct: 205 QANRQDRLSYRAKFDTEMQSVMLVKSSLWNYTAAYLSTPRLDAAFRDFDTYYFGQSLRYA 264 Query: 265 DFLLQTGLNSGNYSVTPTDLLKFYVPQMASITDLRDLLLEDLMARAESHNLRARNLLVLV 324 + + S S+ D + Y+ M S LRDL+L + AR E + +A + Sbjct: 265 QNTIAIVVPSALPSIR--DFSENYIQGMRSSDQLRDLILAETRARIEKNKQQALIYGLAS 322 Query: 325 VSLTLIACLFFQLLMVLIRRRVLQPLVRATDLVSGLVEGKLEQDIPEARHQD----EIGA 380 + L LIA + L + + + QP+ +S + G D+ EA+ Q E+ Sbjct: 323 LFLALIAVMVLLRLTSVYKTALFQPMQSVLAQISAIAAG----DLSEAQRQTGVAPEVTK 378 Query: 381 MMRALRVLKHRMRERTSLAKEREALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQR 440 M + L L+ ++R++ + +++ AL QL+ S TD LTGV NRRA L+ + Sbjct: 379 MFQELDFLREQLRQKGEMEEQQRALSEQLRTLSETDALTGVFNRRALEKSVRAILSGDED 438 Query: 441 YGRPLAVILFDIDHFKRINDSFGHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIILL 500 Y + L V++ DIDHFK IND +GH GD L A + LRK D+LARYGGEEF+++L Sbjct: 439 Y-QSLGVMIIDIDHFKSINDRYGHAMGDLALQKTASLLKGALRKTDILARYGGEEFVVVL 497 Query: 501 PESGLEQAAAVAEKLRAALQERVFDIEAGQQIRLSASFGVAGLDDH--EALDRLTKRADL 558 + A A A++LR ++ + FD + G + L+ASFGV + + D L AD Sbjct: 498 QDVSHATATATADRLRRLIEVQTFDEQTG--LSLTASFGVVWQEARAINSWDELIAIADD 555 Query: 559 ALYRAKRLGRNRV 571 LY AKR GRNRV Sbjct: 556 RLYEAKRAGRNRV 568 >aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 251 Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 149/254 (58%), Gaps = 28/254 (11%) Query: 338 LMVLIRRRVLQPLVRATDLVSGLVEGKLEQDIPEA--------RHQDEIG-------AMM 382 + VL+ R L + + +SG+++G +++ + R +D+ A++ Sbjct: 1 VYVLVISRYLSSISKDLKFLSGIIKGVAKKEFSKTDLLRENAMRSKDKDSEIYELKVAVI 60 Query: 383 RALRVLKHRMRERTSLAK---EREALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQ 439 + + LK + E TS K ER AL TD LTG+ NRR F AE++LA A+ Sbjct: 61 KMIETLKKILIE-TSKEKTLYERMAL---------TDPLTGLYNRRVFTEMAEKELAKAK 110 Query: 440 RYGRPLAVILFDIDHFKRINDSFGHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIIL 499 RYG ++++ DID+FK+IND++GH GD +L ++ + + +R D++AR+GGEEFI++ Sbjct: 111 RYGYNFSILMIDIDNFKKINDTYGHDVGDLVLKKISEILKRNVRGADLVARFGGEEFIVM 170 Query: 500 LPESGLEQAAAVAEKLRAALQERVFDIEAGQQIRLSASFGVAGLDDHEALDRLTKRADLA 559 L + L A AE+LR +++ ++ G+++R++ S GV+ HE+L+ L K AD A Sbjct: 171 LSNTNLNGAVKKAEQLRRMIEQTPIELPNGEKLRVTVSIGVSTYRGHESLEELIKEADQA 230 Query: 560 LYRAKRLGRNRVEL 573 LY AKR G+NRVE+ Sbjct: 231 LYEAKRKGKNRVEV 244 >PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 525 Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 402 REALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDS 461 R+A+ +L+ ++TD LTG+ NR +F AE L A+R+ P ++ DIDHFK INDS Sbjct: 350 RKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDS 409 Query: 462 FGHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQE 521 GH GD L A+ + Q LR+VD+L R GGEEF LLPE L+QA VAE+LRA ++ Sbjct: 410 HGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEA 469 Query: 522 RVFDIEAGQQIRLSASFGVA-GLDDHEALDRLTKRADLALYRAKRLGRNRVELA 574 G+ +R++ S GVA D + L+ L RAD ALY+AK GRNR E A Sbjct: 470 LRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRTEYA 523 >PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 671 Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 130/221 (58%), Gaps = 10/221 (4%) Query: 357 VSGLVEGKLEQDIPEARHQDEIGAMMRALRVLKHRMRERTSLAKEREALITQLQASSN-- 414 ++GL+ E +A H+ E+ ++AL M S+ ++ +A + L+ Sbjct: 458 LNGLLASMDEHQREQAEHEQEVSGRLQAL------MERVNSMEQDAKAFHSHLEDQRQKA 511 Query: 415 -TDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSFGHQAGDAILVG 473 TD LTG+ NR A EQ++A R G L + + DIDHFKRIND FGH AGD +L Sbjct: 512 LTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKI 571 Query: 474 AAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQERVFDIEAGQQIR 533 A + + LR+ D +AR+GGEEF++LLP + LE + E+LRAA+ F + G+ + Sbjct: 572 IAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFK-GEPLS 630 Query: 534 LSASFGVAGLDDHEALDRLTKRADLALYRAKRLGRNRVELA 574 ++ S G+ + +EA + + +RAD ALYRAKR GR+R+E+A Sbjct: 631 ITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA 671 >SMc01370 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Sme Sinorhizobium meliloti Length = 455 Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 415 TDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSFGHQAGDAILVGA 474 TD LTG+ NRR ++ + + A GRPL++ + DID FKR+ND+ GH AGD +L Sbjct: 292 TDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVNDTHGHDAGDDVLREF 351 Query: 475 AQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQERVFDI-EAGQQIR 533 A V +R D+ R+GGEEF++++P++ E AA VAE+LR A++ R FDI +A + Sbjct: 352 ANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVESRGFDIPQAATVLN 411 Query: 534 LSASFGVAGLDDH-EALDRLTKRADLALYRAKRLGRNRV 571 ++AS G+A L H + + L KRAD+ALY+AK GRNRV Sbjct: 412 VTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRV 450