BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1768.p         (100 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1969 Non COG                                                         57   1e-08
RSp0641_7 [Q] COG1020 Non-ribosomal peptide synthetase modules a...    34   0.097
RSp0642_2 [Q] COG1020 Non-ribosomal peptide synthetase modules a...    33   0.18 
MA1345 [V] COG1680 Beta-lactamase class C and other penicillin b...    33   0.19 
CC1694 Non COG                                                         32   0.34 

>PA1969 Non COG
          Length = 130

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 34  GQCNVARAEHLIGENLNAQLEQQALADSGASQIRVLKPDSAATMDVNPRRLNLHVDPGLV 93
           G+C+    +  +G+  +A + ++A   +GA   R L+P  A TMD NPRRLN+ VD  LV
Sbjct: 64  GRCDANAVQAYVGKQASAAIVEEARRAAGAEVARALRPHDAVTMDYNPRRLNIDVDDTLV 123

Query: 94  VIQVACG 100
           + +++CG
Sbjct: 124 IKRLSCG 130


>RSp0641_7 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins Rso Ralstonia solanacearum
          Length = 1054

 Score = 33.9 bits (76), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 33  AGQCNVARAEHLIGENLNAQLEQQALADSGASQIRVLKPDSAATMDVNPRRLNLHVDPGL 92
           AG+C   R     GE L+  L+Q++LA    S++  L   + A +DV   R N  + PG+
Sbjct: 714 AGRCQGLRRMLCSGEALSHALQQRSLARFPHSELHNLYGPTEAAIDVTAWRCNAEIHPGV 773

Query: 93  VVI 95
           V I
Sbjct: 774 VPI 776


>RSp0642_2 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins Rso Ralstonia solanacearum
          Length = 1086

 Score = 33.1 bits (74), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 33  AGQCNVARAEHLIGENLNAQLEQQALADSGASQIRVLKPDSAATMDVNPRRLNLHVDPGL 92
           AG+C   R     GE L   L+Q++LA    S++  L   + A +DV   R N  + PG+
Sbjct: 714 AGRCQGLRRMLCSGEALPHALQQRSLARFPHSELHNLYGPTEAAIDVTAWRCNAEIHPGV 773

Query: 93  VVI 95
           V I
Sbjct: 774 VPI 776


>MA1345 [V] COG1680 Beta-lactamase class C and other penicillin binding
          proteins Mac Methanosarcina acetivorans str.C2A
          Length = 671

 Score = 32.7 bits (73), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 3  PAIKALLASLGLGAVLIACSAS-----RENESADAAGQCNVARAEHLIGENLNAQLE 54
          P  KA + +LGL  + +  SA+     + N +++A+G  N A  E  +   +NAQL+
Sbjct: 26 PGRKAFIFALGLAVIFLTFSAASASPIKSNVTSNASGPTNSAELEAFMDGAVNAQLK 82


>CC1694 Non COG
          Length = 139

 Score = 32.0 bits (71), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 35  QCNVARAEHLIGENLNAQLEQQALADSGASQIRVLKPDSAATMDVNPRRLN--LHVDPGL 92
           +C +  A+  IG     QL     A    S+ RV       TMD  P RLN   + D G 
Sbjct: 78  ECGLKDAQQFIG-----QLRTSLPAPVDPSRWRVACTTCPVTMDYRPDRLNILFNADTG- 131

Query: 93  VVIQVACG 100
           VV QV CG
Sbjct: 132 VVQQVKCG 139