BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1754.p         (124 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...   166   1e-41
PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    73   2e-13
CC2530 Non COG                                                         67   1e-11
CC0068 Non COG                                                         55   3e-08
VNG0388C [PR] COG2146 Ferredoxin subunits of nitrite reductase a...    48   4e-06

>RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Rso Ralstonia
           solanacearum
          Length = 138

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 91/116 (78%)

Query: 5   EEIFICPASELLERGLGKRFPVRLHGEATTGFVVRHGGVVHGYLNRCAHVPIELDWAEGE 64
           E + IC  ++LL+ GLG RFPV + G     FVVR+ G VHGYLN+CAHVP+E+DW EG+
Sbjct: 9   EPVRICAGADLLDGGLGVRFPVEVRGRPMGAFVVRYAGGVHGYLNQCAHVPMEMDWQEGQ 68

Query: 65  FFESSGLYLMCATHGAVYAPDTGKCVGGPCTGAHLRKIMAVERDGQIYWRPDDIVK 120
           FFESSGLYLMCATHGA+Y PDTG+CVGGPC GAHL K+   ERDG ++WRPD + +
Sbjct: 69  FFESSGLYLMCATHGAIYEPDTGRCVGGPCRGAHLTKLDVAERDGDVWWRPDALCR 124


>PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Pae Pseudomonas
           aeruginosa
          Length = 115

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 7   IFICPASELLERGLGKRFPVRLHGEATTGFVVRHGGVVHGYLNRCAHVPIELDWAEGEFF 66
           I +CP+S L E G  + F V    +    F VR  G  + YLNRC H  I L+W    F 
Sbjct: 10  IHLCPSSHLAE-GNSRGFLV----DERRLFAVRRDGRAYIYLNRCPHRGIPLEWQPDTFL 64

Query: 67  ESSGLYLMCATHGAVYAPDTGKCVGGPCTGAHLRKIMAVERDGQIYW 113
           + S   + CA+HGA++  ++G+CV GPC G  LR +   E D +  W
Sbjct: 65  DDSASLIRCASHGALFLIESGECVAGPCAGERLRALPCRE-DAEGLW 110


>CC2530 Non COG
          Length = 90

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query: 35  GFVVRHGGVVHGYLNRCAHVPIELDWAEGEFFESSGLYLMCATHGAVYAPDTGKCVGGPC 94
           GFVVR G  V GY++RC H  + L      +    G  ++C+ HGAV+  + G CVGGPC
Sbjct: 11  GFVVRRGEAVFGYVDRCPHAGLPLAQELDRYLTPDGDLILCSWHGAVFKVEDGACVGGPC 70

Query: 95  TGAHLRKIMAVERDGQI 111
           TGA L+      R+G++
Sbjct: 71  TGARLKPWPVEAREGRV 87


>CC0068 Non COG
          Length = 122

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 4   PEEIFICPASELLERGLGKRFPVRLHGEATTGFVVRHGGVVHGYLNRCAHVPIELDWAEG 63
           P    +C   E+   G  K F  R       GFVVR G  + GY++ C H    L    G
Sbjct: 12  PPGTVLCGLDEIASPG-SKGFRWREGDAMFAGFVVRKGEALVGYVDSCPHAGWPLAGFAG 70

Query: 64  EFFESSGLYLMCATHGAVYAPDTGKCVGGPC-TGAHLRKIMAVERDGQI 111
            +       ++C+ H A++  + G CV GPC T A L       RDGQI
Sbjct: 71  RYLTRDNDLILCSGHAALFRIEDGGCVAGPCPTSARLTPWPVAVRDGQI 119


>VNG0388C [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Hbs Halobacterium sp.
           NRC-1
          Length = 156

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 16  LERGLGKRFPVRLHG---EATTGFVVRHGGVVHGYLNRCAH-VPIELDWAEGEFFESSGL 71
           L+ G   RF VR      E     V    G + G+LN C H   + LD   G   +    
Sbjct: 28  LQAGDSFRFTVRDRDSGDEQEAILVALSDGSITGWLNYCMHWTDVTLDSGSGAVRDGE-- 85

Query: 72  YLMCATHGAVYAPDTGKCVGGPCTGAHLRKIMAVERDGQI 111
            L+C  H A + P +G C  GPC GA L  +    +DG +
Sbjct: 86  -LVCRKHAATFDPTSGVCTHGPCEGATLTAVDVTVQDGTV 124