BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1751.p (1075 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1040 [J] COG1530 Ribonucleases G and E Rso Ralstonia solanace... 988 0.0 NMA0071 [J] COG1530 Ribonucleases G and E NmA Neisseria meningit... 778 0.0 NMB0196 [J] COG1530 Ribonucleases G and E Nme Neisseria meningit... 775 0.0 PA2976 [J] COG1530 Ribonucleases G and E Pae Pseudomonas aeruginosa 720 0.0 XF2607 [J] COG1530 Ribonucleases G and E Xfa Xylella fastidiosa ... 702 0.0 >RSc1040 [J] COG1530 Ribonucleases G and E Rso Ralstonia solanacearum Length = 1014 Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/765 (67%), Positives = 594/765 (77%), Gaps = 48/765 (6%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQQEELRVAIVDGQKLIDIDIET GREQRK NIYKGVITRIEPSLEACFVNY Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY 60 Query: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 GEERHGFLPFKEVAR+YFK G+DVR A I++AL EGQE+IVQVEKEERGNKGAALT+FIS Sbjct: 61 GEERHGFLPFKEVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGNKGAALTTFIS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRR+EGEDRQELRETM +L +P GMS+IARTAGIGR+ +ELQ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRSAEELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDLNYLMQLW+A++GA LIY ESSLVIRAIRDYFQPDIGEILIDTDDI+DQA+ Sbjct: 181 WDLNYLMQLWKAVDGAAVENKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR 240 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 FM+ VMPD ++RVK+YRDDVPLFSRFQIEHQIE+AYSR V LPSGGAIVIDHTEALV+V Sbjct: 241 AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAV 300 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNSARAT+G+DIE TA TNLEAADE+ARQLRLRDLGGLIVIDFIDME+SK Q++VE R Sbjct: 301 DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR 360 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 LKDAL HDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ Sbjct: 361 LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 VLRIIQEEAMKEN+AAIH Q PV+VAAFLLNEKR +I IETR +V V++IPNKHLETPH Sbjct: 421 VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH 480 Query: 481 YKMERIKHDDPRLDDAQASYTM----AEQADTDIGYSQRQKEEVRPRQEAVVKGITPDQP 536 YK+ER++HDDPRLDD +ASY M A++ + D YS R KE +PRQEA VKGITP+QP Sbjct: 481 YKLERLRHDDPRLDDNKASYKMAEEAAKELEADTAYSTR-KEAAKPRQEAAVKGITPEQP 539 Query: 537 APIVERKAPEPV------AAAVPPPTLAPESGLLGKIFAFFRKKPVAPVEAPAAVEAKAP 590 AP+ ++ P AA + + G + + + F KP PV A + P Sbjct: 540 APVSVPRSERPARAEATPAAPQAAAPVPAQGGFVSWLKSLFGGKPAEPV---VAAPVETP 596 Query: 591 AKREGERGGRGGERNGRNRNRGERTERGER-AERGERGERNGEQRAAR-GPAAVELKTGE 648 + E +G R+RG R +RG R +RGERGER G+Q+A R G + + G Sbjct: 597 KRAE----------DGNRRDRGNRQDRGGRTGQRGERGERQGQQQAGRDGQRQGQGRDGG 646 Query: 649 AAEAKQARPPR-GPREPKEGREPREAREGQEPKEARRNETREPREPREPREAREG----- 702 EA++ + R G RE + G R ++P E ET E R+P++ +EAREG Sbjct: 647 RNEAREGQAQREGQREGQRGGRDR----NRQPAETAERETVEARQPQQGQEAREGQGRRE 702 Query: 703 ----------REVREGREPRTPREPREPRAPRG--ERNPAKTEEG 735 RE REGREPR REPRE R R ER+ + +EG Sbjct: 703 RSQERRERAPREGREGREPREGREPRESRDNREGRERDTQQAKEG 747 >NMA0071 [J] COG1530 Ribonucleases G and E NmA Neisseria meningitidis Z2491 Length = 919 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/541 (68%), Positives = 445/541 (82%), Gaps = 7/541 (1%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQ EELRVAIVDGQ L+D+DIET G+EQRK NIYKG+ITRIEPSLEACFV+Y Sbjct: 1 MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY 60 Query: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 G +RHGFLPFKEV+RSYF++ R A I++ L+EG E+IVQVEK+ERGNKGAALT+FIS Sbjct: 61 GTDRHGFLPFKEVSRSYFQDYEGGR-ARIQDVLKEGMEVIVQVEKDERGNKGAALTTFIS 119 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRR+EGE+RQEL+ M +LD+PNGMS+IARTAGIGR+ +EL+ Sbjct: 120 LAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPNGMSIIARTAGIGRSAEELE 179 Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDLNYL QLW+AIE AG++ +L++ ESSL+IRAIRDYF+PDIGEIL+D +++DQ Sbjct: 180 WDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVA 239 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 +FM++VMP + R+K Y D PLFSRFQIEHQIE+A+SR+V LPSGGAIVIDHTEALVS+ Sbjct: 240 EFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSI 299 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNSARATRG+DIE TAF TN+EAA+EVARQ+RLRDLGGL+VIDFIDMEN K+QR+VE Sbjct: 300 DVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENV 359 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 L+DAL DRARVQMGK+SRFGL+ELSRQRL+P+L E SHV CPRC GTG IR ES+AL Sbjct: 360 LRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALH 419 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 VLRIIQEEAMK+N+ +H Q PVDVA FLLNEKR E+ +E R V V++IPN HLE PH Sbjct: 420 VLRIIQEEAMKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPH 479 Query: 481 YKMERIKHDDPRLDDAQASYTMA---EQADTDIGYSQRQKEEVRPRQEAVVKGITPDQPA 537 Y++ RI+ DD +D + SY E+ ++ + + + RP E VKG+ PA Sbjct: 480 YEINRIRTDDVE-EDGEPSYKRVAEPEENESAKPFGGEKAKAARP--EPAVKGVRHTSPA 536 Query: 538 P 538 P Sbjct: 537 P 537 >NMB0196 [J] COG1530 Ribonucleases G and E Nme Neisseria meningitidis MC58 Length = 919 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/541 (67%), Positives = 443/541 (81%), Gaps = 7/541 (1%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQ EELRVAIVDGQ L+D+DIET G+EQRK NIYKG+ITRIEPSLEACFV+Y Sbjct: 1 MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY 60 Query: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 G +RHGFLPFKEV+RSYF++ R A I++ L+EG E+IVQVEK+ERGNKGAALT+FIS Sbjct: 61 GTDRHGFLPFKEVSRSYFQDYEGGR-ARIQDVLKEGMEVIVQVEKDERGNKGAALTTFIS 119 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRR+EGE+RQEL+ M +LD+PNGMS+IARTAGIGR+ +EL+ Sbjct: 120 LAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELE 179 Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDLNYL QLW+AIE AG++ +L++ ESSL+IRAIRDYF+PDIGEIL+D +++DQ Sbjct: 180 WDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVA 239 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 +FM++VMP + R+K Y D PLFSRFQIEHQIE+A+SR+V LPSGGAIVIDHTEALVS+ Sbjct: 240 EFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSI 299 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNSARATRG+DIE TAF TN+EAA+EVARQ+RLRDLGGL+VIDFIDMEN K+QR+VE Sbjct: 300 DVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENV 359 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 L+DAL DRARVQMGK+SRFGL+ELSRQRL+P+L E SHV CPRC GTG IR ES+AL Sbjct: 360 LRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALH 419 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 VLRIIQEEAMK+N+ + Q PVDVA FLLNEKR E+ +E R V V++IPN HLE PH Sbjct: 420 VLRIIQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPH 479 Query: 481 YKMERIKHDDPRLDDAQASYTMAEQADTDIG---YSQRQKEEVRPRQEAVVKGITPDQPA 537 Y++ RI+ DD +D + SY + + D + + + RP E VKG+ PA Sbjct: 480 YEINRIRTDDVE-EDGEPSYKRVAEPEEDESAKPFGGEKAKAARP--EPAVKGVRHTSPA 536 Query: 538 P 538 P Sbjct: 537 P 537 >PA2976 [J] COG1530 Ribonucleases G and E Pae Pseudomonas aeruginosa Length = 1057 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/649 (57%), Positives = 457/649 (70%), Gaps = 40/649 (6%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRML NATQ EELRVA+VDGQ+L D+DIE+ REQ+K+NIYKG ITR+EPSLEA FV++ Sbjct: 1 MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF 60 Query: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 G ERHGFLP KE++R YFK+ + R +IKE L EGQE+IVQVEKEERGNKGAALT+FIS Sbjct: 61 GAERHGFLPLKEISREYFKKSPEGR-INIKEVLSEGQEVIVQVEKEERGNKGAALTTFIS 119 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPR GG+SRR+EGE+R ELRE ++ L+ P M +I RTAG+GR+ +ELQ Sbjct: 120 LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQ 179 Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDL+YL+QLW AI+ A FLIYQES+++IRAIRDY + DIGE+LID+ D ++A Sbjct: 180 WDLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEAL 239 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 F+ VMP +VK Y+D VPLF+RFQIE QIETA+ R V LPSGG+IVID TEALVS+ Sbjct: 240 NFIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSI 299 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 D+NSARAT+G DIE TA TNLEAA+E+ARQLRLRD+GGLIVIDFIDM +KNQR VE R Sbjct: 300 DINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEER 359 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 +++AL DRARVQ+G+ISRFGL+E+SRQRLRPSL E S + CPRCNG G IRD ES +L Sbjct: 360 VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLA 419 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 +LR+I+EEA+K+ +A + + P VAAFLLNEKR I KIE R R + ++P+ HLETPH Sbjct: 420 ILRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPH 479 Query: 481 YKMERIKHDDPRLDDAQASYTMAEQADTDIGYSQRQKEEVRP--------RQEAVVKGIT 532 ++++R++ D P L Q SY MA + EE +P RQEA VK + Sbjct: 480 FEVQRLRDDSPELVAGQTSYEMA----------TVEHEEAQPVSSTRTLVRQEAAVKTVA 529 Query: 533 PDQPAPIVERKAPEPVAAAVPPPTLAPESGLLGKIFAFFRKKPVAPVEAPAAVEAKAPAK 592 P QPAP + PV A P P + GL+ + F K P PA E PA Sbjct: 530 PQQPAP---QHTEAPVEPAKPMPEPSLFQGLVKSLVGLFAGKD-QPAAKPA--ETSKPA- 582 Query: 593 REGERGGRGGERNGRNRNRG------------ERTERGERAERGERGER 629 ER R ER + ER R ERAER R ER Sbjct: 583 --AERQTRQDERRNGRQQNRRRDGRDGNRRDEERKPREERAERQPREER 629 >XF2607 [J] COG1530 Ribonucleases G and E Xfa Xylella fastidiosa 9a5c Length = 1132 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/559 (58%), Positives = 419/559 (74%), Gaps = 23/559 (4%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRML NATQ EELRVAIVDGQ L DIDIE +EQ+KSNIYKG ITR+EPSLEA FV+Y Sbjct: 1 MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY 60 Query: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 G +RHGFLP KE+++ YF+ G+D A I+E LREGQEI+VQV+KEERGNKGAALT+FIS Sbjct: 61 GTDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFIS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRY+VLMPN+P GGVSRR+EGEDR L+E ++KL++PN M VI RTAG+GR+ ELQ Sbjct: 121 LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALEKLNIPNDMGVIIRTAGVGRDTQELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDL++L+ WRAI A S LIYQES L+IRA+RDYF+ DIGEIL+DT++++ A Sbjct: 181 WDLDFLLHAWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAH 240 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 +FM HVMP + ++K Y+DD+PLF+RFQIE QIE AY R V LPSGG+IV+D TEAL ++ Sbjct: 241 EFMRHVMPQSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAI 300 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNS+RAT+G+DIE TAF TNLEAADE+ARQLRLRD+GGL+VIDFIDM +SK+QRE+E R Sbjct: 301 DVNSSRATKGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETR 360 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 L++ L +DRARVQ+ +ISRFGL+E+SRQRLRPSL E S + CP C+G G +R ES +L Sbjct: 361 LQNCLKYDRARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLS 420 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 ++RI++E AMKEN+ + VQ PV++A +LLNEKR I +IE RH +I+I ++ L TPH Sbjct: 421 IIRIVEEHAMKENTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPH 480 Query: 481 YKMERIKHDDPRLDDAQASYTMAEQADTDIGYSQRQKEEVRPRQEAVVKGITPDQPAPIV 540 Y++ R++ ++ + + SY QR P V +T Q Sbjct: 481 YEVTRLRENELSEETGKPSY-------------QRNTPRKLP-----VHALTKSQ----- 517 Query: 541 ERKAPEPVAAAVPPPTLAP 559 P P ++PPP LAP Sbjct: 518 LNIPPAPAVKSIPPPQLAP 536