BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1744.p         (116 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cj1275c [M] COG0739 Membrane proteins related to metalloendopept...    30   1.4  
ML1051 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ...    30   1.9  
PA1646 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu...    29   2.0  
SMb21452 Non COG                                                       29   2.9  
SPBC365.07c Non COG                                                    29   3.2  

>Cj1275c [M] COG0739 Membrane proteins related to metalloendopeptidases Cje
           Campylobacter jejuni
          Length = 397

 Score = 30.0 bits (66), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 45  QQVKPVGSDVDQLGQRLAQLEAEQLEATQLINTLAEQNAQLVATMDRMRRRLQLLTA 101
           + +K +   ++ L  + ++LEA      Q +NTL  QN  L+ +   M  +L  L A
Sbjct: 56  KSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSNMEGKLISLMA 112


>ML1051 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Mle Mycobacterium leprae
          Length = 476

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 43  DAQQVKPVGSDVDQLGQRLAQL--EAEQLEATQLINTLAEQ 81
           D ++V  VG   + LGQR+      AE L+A +LIN +A+Q
Sbjct: 403 DVREVAVVGLPDEDLGQRIVAFVVGAEALDADELINYVAQQ 443


>PA1646 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas
           aeruginosa
          Length = 652

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 16  DVVQATPGIVKGARELWSRTRKAKTAVDA--QQVKPVGSDVDQLGQRLAQLEAEQLEATQ 73
           D  +  P  ++ A EL +R  +A T  DA    VK V +++     +LA+  A QL+  Q
Sbjct: 207 DAQEGPPKSLREALELAARLEQAITD-DAYVSVVKDVLTNIRGFADKLAEYRASQLQERQ 265

Query: 74  LINTLAEQNAQLVATMDR 91
           +   + E+  Q++A +DR
Sbjct: 266 MYAAMGERAGQVMARVDR 283


>SMb21452 Non COG
          Length = 174

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 13  PWGDVVQATPGIVKGARELWSRTRKAKTAVDAQQVKPVGSDVDQLGQRLAQLEAEQLEAT 72
           P  D     P  V    + W R RK+   V        G+ +D+L +R+A+L+AE     
Sbjct: 74  PGADARPLDPPSVDEPIDAWERDRKSAPEV--------GNQLDELRERIARLQAE----- 120

Query: 73  QLINTLAEQNAQLVATM 89
             I+T+A +    V T+
Sbjct: 121 --IDTIATETHTAVGTV 135


>SPBC365.07c Non COG
          Length = 547

 Score = 28.9 bits (63), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 13/73 (17%)

Query: 32  WSRTRKAKTAVDAQQVKPVGSDVDQLGQRLAQLEAEQLEATQLIN--------TLAEQNA 83
           W R R+        QV  +   +D L ++L + + E++ ++Q  N        TLA QN 
Sbjct: 188 WERERETFQ----NQVSQMSKQLDSL-EKLCERKDEEIRSSQAFNMTLREENDTLAAQNL 242

Query: 84  QLVATMDRMRRRL 96
            L   +DR++R L
Sbjct: 243 DLQTQLDRLQREL 255