BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1742.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4874 Non COG                                                         94   8e-20
YPO1134 Non COG                                                        63   1e-10
STM0384 Non COG                                                        63   2e-10
psiF Non COG                                                           62   2e-10
ZpsiF Non COG                                                          62   2e-10

>PA4874 Non COG
          Length = 138

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 58/74 (78%), Gaps = 5/74 (6%)

Query: 27  NAQQDKMKQCNADAAGK--KGDERKAFMSSCLK-KEQPKPATQQDKMKQCNADAAGK--K 81
            AQQ+KMK CNADA+ K  KGDERKAFMSSCLK     K ATQQ+KMK CNADA  K  K
Sbjct: 65  TAQQEKMKSCNADASAKSLKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALK 124

Query: 82  GDERKAFMSSCLKK 95
           GDERKAFMS+CLKK
Sbjct: 125 GDERKAFMSTCLKK 138



 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 64/97 (65%), Gaps = 9/97 (9%)

Query: 5  IFAMTTFALAAPLLLSSPAMAQNAQQDKMKQCNADAAGK--KGDERKAFMSSCLKKEQP- 61
          I  +  F LA  + +S+   A  AQQ+KM  CNA+A  K  KGDERKAFMS CLK   P 
Sbjct: 3  ILRIPMFVLA--MAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPA 60

Query: 62 --KPATQQDKMKQCNADAAGK--KGDERKAFMSSCLK 94
            K   QQ+KMK CNADA+ K  KGDERKAFMSSCLK
Sbjct: 61 GGKATAQQEKMKSCNADASAKSLKGDERKAFMSSCLK 97


>YPO1134 Non COG
          Length = 111

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 46/72 (63%), Gaps = 10/72 (13%)

Query: 33  MKQCNADAAGK--KGDERKAFMSSCLKKEQPKP-----ATQQDKMKQCNADAAGK--KGD 83
           M  CN  A+ +  KGDERK FMS CL K Q  P       QQ KMK CNA+AA K  KGD
Sbjct: 39  MTDCNQQASTQSLKGDERKNFMSQCL-KAQTAPDGKALTPQQQKMKSCNAEAAQKMLKGD 97

Query: 84  ERKAFMSSCLKK 95
           ERK FMS+CLKK
Sbjct: 98  ERKTFMSTCLKK 109


>STM0384 Non COG
          Length = 106

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 1   MKKLIFAMTTFALAAPLLLSSPAMAQNAQQDKMKQCN--ADAAGKKGDERKAFMSSCLKK 58
           MK  +     F L     + +       QQ +M  CN  A A   KGD RK ++S CLK 
Sbjct: 1   MKITLLVTLLFGLVFLTAVGATEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKN 60

Query: 59  EQPKPAT-----QQDKMKQCNADAAGK--KGDERKAFMSSCLKK 95
            Q  P       QQ KM++CN  A  +  KGD+R  FMS+CLKK
Sbjct: 61  SQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKK 104


>psiF Non COG
          Length = 112

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 1   MKKLIFAMTTFALAAPLLLSSPAMAQNAQQDKMKQCN--ADAAGKKGDERKAFMSSCLKK 58
           MK  +     F L     + +       QQ +M  CN  A A   KGD RK +MS CLK 
Sbjct: 7   MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKN 66

Query: 59  EQPKPAT-----QQDKMKQCNADAAGK--KGDERKAFMSSCLKK 95
            +  P       QQ KM++CN  A  +  KGD+R  FMS+CLKK
Sbjct: 67  SKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKK 110


>ZpsiF Non COG
          Length = 112

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 1   MKKLIFAMTTFALAAPLLLSSPAMAQNAQQDKMKQCN--ADAAGKKGDERKAFMSSCLKK 58
           MK  +     F L     + +       QQ +M  CN  A A   KGD RK +MS CLK 
Sbjct: 7   MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKN 66

Query: 59  EQPKPAT-----QQDKMKQCNADAAGK--KGDERKAFMSSCLKK 95
            +  P       QQ KM++CN  A  +  KGD+R  FMS+CLKK
Sbjct: 67  SKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKK 110