BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1715.p         (220 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TP0837 [J] COG0441 Threonyl-tRNA synthetase Tpa Treponema pallidum     33   0.52 
MT0612 [G] COG3537 Putative alpha-1,2-mannosidase MtC Mycobacter...    32   1.3  
Rv0584 [G] COG3537 Putative alpha-1,2-mannosidase Mtu Mycobacter...    32   1.4  
VNG1335G [L] COG0415 Deoxyribodipyrimidine photolyase Hbs Haloba...    31   1.8  
YKL194c [J] COG0441 Threonyl-tRNA synthetase Sce Saccharomyces c...    31   2.0  

>TP0837 [J] COG0441 Threonyl-tRNA synthetase Tpa Treponema pallidum
          Length = 592

 Score = 33.1 bits (74), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 119 NCPGHFIAMAQKDGSTNNIPLSVSG-GFCDRVGPSAP-YGEGTVLAVYQGKQQLFVVQ 174
           NCPGH     QK  S  ++PL +S  G C R  PS   +G   V    Q    +F  +
Sbjct: 283 NCPGHVEIFKQKTRSYRDLPLRLSEFGSCTRNEPSGSLHGVMRVRGFVQDDAHIFCTE 340


>MT0612 [G] COG3537 Putative alpha-1,2-mannosidase MtC Mycobacterium
           tuberculosis CDC1551
          Length = 877

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 23/120 (19%)

Query: 72  AHDSWREGYMGVQRRSFPEAGLLANIQARNLT-VSQV--------ALTEVMQGAQRNCPG 122
           AHD    G  G     FP  G++A + A   T V +         AL  V  GA  +  G
Sbjct: 133 AHDDTEVGVPGYYTVRFPGTGVIAELTATTRTGVGRFRYPRNGWPALFHVRSGA--SLAG 190

Query: 123 HFIAMAQKDGSTNNIPLSVSGGFCDRVG------------PSAPYGEGTVLAVYQGKQQL 170
           ++ A  Q + +T     + SGGFC +              P + YG     AVY G   +
Sbjct: 191 NYAATLQIEDNTTITGSATSGGFCGKKNLYTVYFAMKFSQPFSSYGTWDGYAVYPGSHSM 250


>Rv0584 [G] COG3537 Putative alpha-1,2-mannosidase Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 877

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 23/120 (19%)

Query: 72  AHDSWREGYMGVQRRSFPEAGLLANIQARNLT-VSQV--------ALTEVMQGAQRNCPG 122
           AHD    G  G     FP  G++A + A   T V +         AL  V  GA  +  G
Sbjct: 133 AHDDTEVGVPGYYTVRFPGTGVIAELTATTRTGVGRFRYPRNGWPALFHVRSGA--SLAG 190

Query: 123 HFIAMAQKDGSTNNIPLSVSGGFCDRVG------------PSAPYGEGTVLAVYQGKQQL 170
           ++ A  Q + +T     + SGGFC +              P + YG     AVY G   +
Sbjct: 191 NYAATLQIEDNTTITGSATSGGFCGKKNLYTVYFAMKFSQPFSSYGTWDGYAVYPGSHSM 250


>VNG1335G [L] COG0415 Deoxyribodipyrimidine photolyase Hbs Halobacterium sp.
           NRC-1
          Length = 489

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 57  EPDGDYVVDFLP-----PNEAHDSWREGYMGVQRRSFPE 90
           +PD DY+ +F+P     P +A  SW E  +  +RR  PE
Sbjct: 425 DPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPE 463


>YKL194c [J] COG0441 Threonyl-tRNA synthetase Sce Saccharomyces cerevisiae
          Length = 462

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 119 NCPGHFIAMAQKDGSTNNIPLSVS 142
           NCPGH +   +KD S N +PL  S
Sbjct: 132 NCPGHCLIFGKKDRSYNELPLRFS 155