BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1712.p         (153 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   174   9e-44
PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...   144   7e-35
BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella me...   141   6e-34
BS_ykmA [K] COG1846 Transcriptional regulators Bsu Bacillus subt...   141   7e-34
CC0915 Non COG                                                        132   2e-31

>RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 153

 Score =  174 bits (440), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 114/150 (76%), Gaps = 5/150 (3%)

Query: 6   DKRK-AAPL----LDAQLCFALYSTSLSMSKLYRKLLRNLGITYSQYLVLMVLWEQDQLT 60
           D RK A+P     LD QLCFALYST + ++K+YR LL+ LG+TY QYLV++VLWE+D LT
Sbjct: 2   DTRKTASPYPNLALDQQLCFALYSTMIGLNKVYRGLLKPLGLTYPQYLVMLVLWERDALT 61

Query: 61  VSDIGERLVLDSATLTPLLKRMEAQGLVSRERAASDERQVVISLTAEGDKLREQAIELPR 120
           VS+IGERL LDS TLTP+LKR+EA GL+ R+R+ +DERQV++SLTAEG +L+ +A ++P 
Sbjct: 62  VSEIGERLFLDSPTLTPMLKRLEAAGLIGRQRSDADERQVIVSLTAEGQRLKHRAKDVPG 121

Query: 121 EVLRATESTAAELSAMKEELMALRARLHKN 150
            V  A E   AEL A++ +L  +R RL KN
Sbjct: 122 CVAAAMECVPAELEALRTQLTGMRTRLFKN 151


>PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 151

 Score =  144 bits (363), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/135 (51%), Positives = 99/135 (73%)

Query: 14  LDAQLCFALYSTSLSMSKLYRKLLRNLGITYSQYLVLMVLWEQDQLTVSDIGERLVLDSA 73
           LD QLCFALYSTSL M+K+Y+ LL+ LG+TY QY+ ++VLWE+D LTV +I  R++ D  
Sbjct: 14  LDNQLCFALYSTSLQMTKVYKPLLQALGLTYPQYIAMLVLWERDGLTVGEISARMLTDPG 73

Query: 74  TLTPLLKRMEAQGLVSRERAASDERQVVISLTAEGDKLREQAIELPREVLRATESTAAEL 133
           +LTPLLKR+E +GL++R R++ DER V++ LT +G  L+ QA  +P  +L +T     +L
Sbjct: 74  SLTPLLKRLEGEGLITRTRSSEDERVVLLRLTDKGRALQRQAESIPACILESTGLDLPQL 133

Query: 134 SAMKEELMALRARLH 148
            A+K+EL+ALR  L 
Sbjct: 134 VALKDELLALRGNLQ 148


>BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella melitensis
          Length = 157

 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 94/130 (72%)

Query: 18  LCFALYSTSLSMSKLYRKLLRNLGITYSQYLVLMVLWEQDQLTVSDIGERLVLDSATLTP 77
           LCFA+YST+ ++S+ Y+ +L  L +TY Q+LV++VLWE+D  TVS+IG RL LDS TLTP
Sbjct: 22  LCFAVYSTANALSRAYQPILAPLDLTYPQFLVMLVLWERDDCTVSEIGARLNLDSGTLTP 81

Query: 78  LLKRMEAQGLVSRERAASDERQVVISLTAEGDKLREQAIELPREVLRATESTAAELSAMK 137
           LLKR+EA G ++R R   DERQV I+LT EG KLREQA  +P +++ AT    +EL  ++
Sbjct: 82  LLKRLEAAGRITRRRDPRDERQVRITLTDEGRKLREQAESVPEQIMCATGQPVSELQDLR 141

Query: 138 EELMALRARL 147
             LM +R  L
Sbjct: 142 NRLMKIRNHL 151


>BS_ykmA [K] COG1846 Transcriptional regulators Bsu Bacillus subtilis
          Length = 147

 Score =  141 bits (355), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 101/149 (67%), Gaps = 4/149 (2%)

Query: 1   MNSKTDKRKAAPLLDAQLCFALYSTSLSMSKLYRKLLRNLGITYSQYLVLMVLWEQDQLT 60
           M +K D  K    L+ QLCF LY++S  M+K Y+ LL  L ITY QYL L++LWE + LT
Sbjct: 1   MENKFDHMK----LENQLCFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETLT 56

Query: 61  VSDIGERLVLDSATLTPLLKRMEAQGLVSRERAASDERQVVISLTAEGDKLREQAIELPR 120
           V  +GE+L LDS TLTP+LKRME QGL++R+R+  DER V+ISLT +G  L+E+A+++P 
Sbjct: 57  VKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPG 116

Query: 121 EVLRATESTAAELSAMKEELMALRARLHK 149
            +L  ++ +  +L  +K  L  L   LH+
Sbjct: 117 TILGLSKQSGEDLKQLKSALYTLLETLHQ 145


>CC0915 Non COG
          Length = 148

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 89/127 (70%)

Query: 14  LDAQLCFALYSTSLSMSKLYRKLLRNLGITYSQYLVLMVLWEQDQLTVSDIGERLVLDSA 73
           LD QLCFALY  +  M++LYR LL  LG+TY QYL ++VLWE    TV  +GE L LDS+
Sbjct: 17  LDNQLCFALYGAANRMTRLYRPLLDALGLTYPQYLAMLVLWEASPRTVGALGEALDLDSS 76

Query: 74  TLTPLLKRMEAQGLVSRERAASDERQVVISLTAEGDKLREQAIELPREVLRATESTAAEL 133
           TLTPLLKR+EA GLV+R+R   DER+V+++LT +G  LR+QA+ +P +V  A +     +
Sbjct: 77  TLTPLLKRLEAGGLVTRDRDPEDERRVIVALTDKGRALRDQAVTIPEKVFCALDMPLEAM 136

Query: 134 SAMKEEL 140
             +++ L
Sbjct: 137 GVLRDRL 143