BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1688.p         (316 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF0387 [M] COG0463 Glycosyltransferases involved in cell wall bi...    31   3.2  
lin2399 Non COG                                                        31   3.9  

>AF0387 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis
           Afu Archaeoglobus fulgidus
          Length = 305

 Score = 31.2 bits (69), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 17/119 (14%)

Query: 172 GGGKDTTVK-KRPKGPCDHLRQGSGKGPYRGGAHGKTSKPAK---DGKDSHHMPADN--- 224
           G  KD T +  R KG    ++ G GKG     A            DG D  ++P +    
Sbjct: 35  GNSKDRTREIAREKGAEVVIQSGKGKGQAVAEAFEIVDSDILVLVDG-DGTYLPEEVYRL 93

Query: 225 VSPLKSNEGPAIQMDPLDHKNTSSYGYLKKAAFYR-KTVGNLIKNKQWRKALAIEIRDV 282
           + P+K  EG A      DH   + +   +K AF R   +GN + N  +R A  +E+RD+
Sbjct: 94  LEPIK--EGGA------DHVIGNRFASFEKGAFTRLNLIGNKLLNMFFRLAYGVELRDI 144


>lin2399 Non COG
          Length = 127

 Score = 30.8 bits (68), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 226 SPLKSNEGPAIQ--MDPLDHKNTSSYGYLKKAAFYRKTVGNLIKNKQWRKALAIEIRDVR 283
           + L  NE   +Q  ++ L ++NT      KK  F+ KT+   I NKQW      E  ++R
Sbjct: 23  NDLPHNELKELQRELNQLMNRNTEE----KKKNFWNKTIKRFIGNKQWNDITVAEFVEIR 78