BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1675.p (281 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 273 3e-73 mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 258 9e-69 AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 201 2e-51 AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 185 1e-46 SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 130 2e-30 >AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 273 bits (698), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 143/275 (52%), Positives = 192/275 (69%) Query: 5 LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64 LD++AV+AFV A+LQSFTRAAE L +TQ A+S+KLK+LE+RLG+RLLERTPR VRLS+Q Sbjct: 7 LDVEAVEAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRLSAQ 66 Query: 65 GQQFLPVARELLAAHERALEQLEEGPLRFAVGISDHVAGASLPRALAQVHGVDPGVLVEV 124 G FL ARE LAAH+RAL L RF +GI+ HVAG +P LA+++ DPG+ +EV Sbjct: 67 GAVFLAPAREFLAAHDRALAGLSSPRRRFGLGIAAHVAGPEVPTLLARLNDHDPGLTIEV 126 Query: 125 RVASSHDLMPLYEQGELDAVIVRREPRQRGGKLVMQERIGWFAHPEAQCWAGPALRVATF 184 R+ S L+ +++GE+DA I+RRE +R G+++ E GW+A P+ + G LR+A Sbjct: 127 RMDHSRSLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWYATPQFEHRQGEPLRLAAL 186 Query: 185 SSTCGIRELALRRLDEAGIDWIEVFIGGGILAVGAAVSAGLAVSALLHRSAPPAAVEVGE 244 S CG+R +A LD A I W EVF+GG V AAVSAGLA+SA R APP VEV + Sbjct: 187 SPACGVRNIATHALDAAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAPPGTVEVSQ 246 Query: 245 RLGLPSLPLAQVMLHSRLKEPRTQAALRALVAALK 279 R GLP LP +++++ S L + R++ ALR L AA + Sbjct: 247 RFGLPPLPSSEIIMFSTLTDSRSREALRTLAAAFR 281 >mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 302 Score = 258 bits (660), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 136/275 (49%), Positives = 189/275 (68%) Query: 5 LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64 LD+DAV+AFV AEL+SFTRAAEAL STQ A+S+KLK+LE+R+G+RL+ERTPR VRLS++ Sbjct: 3 LDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSAR 62 Query: 65 GQQFLPVARELLAAHERALEQLEEGPLRFAVGISDHVAGASLPRALAQVHGVDPGVLVEV 124 G FL ARELLAAH+RA+ L F +GI+ HV GA +P LA+++ DP + +EV Sbjct: 63 GAVFLDPARELLAAHDRAVASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTIEV 122 Query: 125 RVASSHDLMPLYEQGELDAVIVRREPRQRGGKLVMQERIGWFAHPEAQCWAGPALRVATF 184 R+ + +L+ +++G+LDA IVRRE +R G+++ E GW+A P+ AG LR+A Sbjct: 123 RLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEHFGWYATPDFVYRAGEPLRLAAS 182 Query: 185 SSTCGIRELALRRLDEAGIDWIEVFIGGGILAVGAAVSAGLAVSALLHRSAPPAAVEVGE 244 + +C IR++ LD GI W +VF+G G AV AVSAGLAV A R PP +EV Sbjct: 183 APSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEVSR 242 Query: 245 RLGLPSLPLAQVMLHSRLKEPRTQAALRALVAALK 279 + GLP LP +++ML S L + +++ ALR L A + Sbjct: 243 KFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFR 277 >AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 117/278 (42%), Positives = 170/278 (61%), Gaps = 2/278 (0%) Query: 3 RPLDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLS 62 R LD +AV+AF+L AELQSFT+ A + ++Q+A+SL+L++LE+ LG RL+ERTPRRVRL+ Sbjct: 5 RSLDPEAVEAFLLVAELQSFTQVAGVMNTSQAAISLRLRRLEDMLGHRLVERTPRRVRLT 64 Query: 63 SQGQQFLPVARELLAAHERALEQLEEGPLRFAVGISDHVAGASLPRALAQVHGVDPGVLV 122 + G++FL AR +AA RAL+ + P R A+G++ H+ GA LPR L V V + Sbjct: 65 AAGERFLEPARAYVAAGRRALDVFGQEPTRLAIGVTHHLIGADLPRILRVVSERVTSVTL 124 Query: 123 EVRVASSHDLMPLYEQGELDAVIV-RREPRQRGGKLVMQERIGWFAHPEAQCWAGPALRV 181 +R A + L+ LY+ GELDA++V R + +R G+ + QE GW+ + + + + Sbjct: 125 HLRTAGTRTLLELYDAGELDAIVVLRHDDIRRDGEPLFQESFGWYGSADFDLRSDVPVPL 184 Query: 182 ATFSSTCGIRELALRRLDEAGIDWIEVFIGGGILAVGAAVSAGLAVSALLHRSAPPAAVE 241 C +R +ALR L+ A I W EVF+G G AVGAAV AG+ V LL +SA PA+V Sbjct: 185 VLQPEPCNLRAMALRALESADIAWREVFVGTGATAVGAAVEAGIGV-GLLAQSAAPASVR 243 Query: 242 VGERLGLPSLPLAQVMLHSRLKEPRTQAALRALVAALK 279 LP LP V++ S + A LR + A + Sbjct: 244 QVRSRSLPELPKLDVVMISTVTGDHANAVLRRITGAFR 281 >AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 280 Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 111/276 (40%), Positives = 164/276 (59%), Gaps = 2/276 (0%) Query: 5 LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64 +DL++V+ F+L+ EL S TRAAEA + Q VS KLK LE+RLGRRL++R+PR +RL+ Sbjct: 2 IDLESVRLFILSVELGSLTRAAEAAGTVQPVVSQKLKMLEQRLGRRLIDRSPRHLRLTED 61 Query: 65 GQQFLPVARELLAAHERALEQLEEGPLRFAVGISDHVAGASLPRALAQVHGVDP-GVLVE 123 GQ FLP ARELLA HE AL +E PL FA+ SDH G+ L A+ + P +++ Sbjct: 62 GQVFLPKARELLAKHEDALNFSDEPPLHFALAASDHAIGSRLSAAIRAMRASLPANAVID 121 Query: 124 VRVASSHDLMPLYEQGELDAVIVRREPRQRGGKLVMQERIGWFAHPEAQCWAGPALRVAT 183 V + S + + G DA I+RR G+++ +R+GW P+ + A A+ + + Sbjct: 122 VTLGFSRQVKESFASGLADAAIIRRNGGGSDGEVLRTDRLGWRVAPDWRPRANSAVPLVS 181 Query: 184 FSSTCGIRELALRRLDEAGIDWIEVFIGGGILAVGAAVSAGLAVSALLHRSAPPAAVEVG 243 CG+R++A+ L +AG+ W + F G A+ V AG ++AL SA + G Sbjct: 182 LGPGCGVRDIAISELGKAGVVWRDAFTAGSCSALLEGVHAGAGIAALGDISA-RGLPDRG 240 Query: 244 ERLGLPSLPLAQVMLHSRLKEPRTQAALRALVAALK 279 LGLP LP + ++L SR + P +A+RALVAA+ Sbjct: 241 AELGLPPLPPSDIVLLSRARTPSHASAIRALVAAVS 276 >SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 211 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 96/154 (62%), Gaps = 1/154 (0%) Query: 126 VASSHDLMPLYEQGELDAVIVRREPRQRGGKLVMQERIGWFAHPEAQCWAGPALRVATFS 185 V +S L+ YE G LDAVIVR + +R G+++ E GWFA + + G LR+A+ Sbjct: 2 VDNSRALLDAYEDGTLDAVIVRSDDDRRDGEVLGPEHFGWFASSDFEHHTGEPLRIASHP 61 Query: 186 STCGIRELALRRLDEAGIDWIEVFIGGGILAVGAAVSAGLAVSALLHRSAPPAAVEVGER 245 S C +RE+A R LD A I W EVF+ GG AV AA+SAGLAV+A R A +EV + Sbjct: 62 SCCTVREVATRLLDAASIRWTEVFV-GGTSAVTAALSAGLAVAAFPCRLATADMIEVSQM 120 Query: 246 LGLPSLPLAQVMLHSRLKEPRTQAALRALVAALK 279 L LPS+P ++LHS L +P+T+ LRA+ AA Sbjct: 121 LNLPSIPSLSIVLHSSLTDPKTRETLRAITAAFS 154