BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1657.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2792 Non COG                                                       177   6e-45
PA1053 [M] COG3133 Outer membrane lipoprotein Pae Pseudomonas ae...    86   3e-17
PM0554 [M] COG3133 Outer membrane lipoprotein Pmu Pasteurella mu...    59   3e-09
HI1579 [M] COG3133 Outer membrane lipoprotein Hin Haemophilus in...    59   5e-09
STM1445 [M] COG3133 Outer membrane lipoprotein Sty Salmonella ty...    58   7e-09

>RSc2792 Non COG
          Length = 155

 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 5   LVIAALGSLVAGCAVTPNSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSTGIGTLGGA 64
           L++ ALG  + GCA   NS S Y + QAQ EQTVR G VES+RNV ID+  TG+GTL G 
Sbjct: 12  LLVTALG--LQGCATGSNSNSAYTSYQAQREQTVRFGTVESVRNVVIDREQTGVGTLAGG 69

Query: 65  ALGGIAAGSNIGSGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDNGELRAIT 124
           A+GGI + + IG GNG++AAGI+GA+AGG+ G+  E  +N RPGLEITV+LDNGE RAIT
Sbjct: 70  AVGGIGSAAAIGRGNGSVAAGILGAIAGGIAGSAIEGQVNKRPGLEITVKLDNGEYRAIT 129

Query: 125 QDADEPFRVGERVRLLSNGRTTRVTH 150
           Q+ADE FR GERVRLLS+G  TRVTH
Sbjct: 130 QEADEAFRPGERVRLLSSGGVTRVTH 155


>PA1053 [M] COG3133 Outer membrane lipoprotein Pae Pseudomonas aeruginosa
          Length = 154

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 7/154 (4%)

Query: 2   KKLLVIAALGSL---VAGCAVTPNSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSTGI 58
           K  L++A+  ++   + GC  +  +   Y+  +A+  QTVRMG ++++R V I+   T I
Sbjct: 3   KSALIVASFTAMALALGGCQ-SSLTGDTYSREEARTVQTVRMGTIQALRPVKIEGTKTPI 61

Query: 59  GTLGGAALGGIAAGSNIGSGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDNG 118
           G++ GA +GG+A  +  G G G+  A I+GA+AGG+LG   E  L    G+EITVR D+G
Sbjct: 62  GSIAGAGVGGVAGSAV-GGGKGSYVAAIIGAVAGGLLGAATEEGLTRTQGVEITVREDDG 120

Query: 119 ELRAITQDAD--EPFRVGERVRLLSNGRTTRVTH 150
             RA  Q  D  + FRVGERVR+L+   T+RV H
Sbjct: 121 STRAYVQQVDQGQIFRVGERVRILTVNGTSRVAH 154


>PM0554 [M] COG3133 Outer membrane lipoprotein Pmu Pasteurella multocida
          Length = 154

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 3/143 (2%)

Query: 1   MKKL-LVIAALGSL-VAGCAVTP-NSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSTG 57
           MKK+   +A L SL +AGCA T   S +VY   QA+  +++  G + S R V I   S G
Sbjct: 1   MKKVTFALAILMSLGLAGCANTDIYSGNVYEGNQAKEVRSISYGTIVSSRPVKIQADSQG 60

Query: 58  IGTLGGAALGGIAAGSNIGSGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDN 117
           +    G    G   GS IG G G + A  VGA+AG V+G +AE  LN    LE+ ++ DN
Sbjct: 61  VLGGFGGGALGGIVGSGIGGGTGQMIATTVGAIAGAVIGAKAEEKLNQVDSLELVIKKDN 120

Query: 118 GELRAITQDADEPFRVGERVRLL 140
           G+   + Q  D+    G RVR++
Sbjct: 121 GQEIVVVQKYDQSLVPGARVRIV 143


>HI1579 [M] COG3133 Outer membrane lipoprotein Hin Haemophilus influenzae
          Length = 155

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 14  VAGCAVTP-NSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSTGIGTLGGAALGGIAAG 72
           V GCA T   S  VY+  QA+  +++  G + S+R V I   + G+    G    G  AG
Sbjct: 16  VTGCANTDIFSGDVYSASQAKEARSITYGTIVSVRPVKIQADNQGVVGTLGGGALGGIAG 75

Query: 73  SNIGSGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDNGELRAITQDADEPF 131
           S IG G G   A +VGA+ G + G++ E  ++   G E+ ++ D+G+   + Q AD  F
Sbjct: 76  STIGGGRGQAIAAVVGAIGGAIAGSKIEEKMSQVNGAELVIKKDDGQEIVVVQKADSSF 134


>STM1445 [M] COG3133 Outer membrane lipoprotein Sty Salmonella typhimurium
           LT2
          Length = 155

 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 5/153 (3%)

Query: 1   MKKLLVIAALGSLVAGCAVTPN-SASVYNTRQAQGEQTVRMGVVESIRNVTIDKG--STG 57
           +K++L ++ +G  +AGC    + S  VY   +A+  Q V  G + ++R V I  G  S  
Sbjct: 2   IKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNV 61

Query: 58  IGTLGGAALGGIAAGSNIGSGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDN 117
           IG +GGA LGG   G+ IG G G   A   GA+AGGV G   ++ +N   G+E+ +R D+
Sbjct: 62  IGAIGGAVLGGF-LGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD 120

Query: 118 GE-LRAITQDADEPFRVGERVRLLSNGRTTRVT 149
           G  +  + +  +  F  G+RV L SNG    V+
Sbjct: 121 GNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVS 153