BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1656.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0276 [S] COG4539 Predicted membrane protein Pae Pseudomonas ae...    80   2e-15
RSp0806 Non COG                                                        66   3e-11
SPAC16E8.02 [S] COG4539 Predicted membrane protein Spo Schizosac...    47   2e-05
YGL010w [S] COG4539 Predicted membrane protein Sce Saccharomyces...    46   3e-05
VNG0230C [S] COG3356 Predicted membrane protein Hbs Halobacteriu...    33   0.26 

>PA0276 [S] COG4539 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 171

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 78/136 (57%), Gaps = 11/136 (8%)

Query: 29  LARYAEHHRHPMNELIHCVCVPAIVFSLL------GLCWMISPAVSLLVVAAALAYYLRL 82
           LA+YA +HR   N   H + +P IV S+        L + +SPA+   +  AA  +YLRL
Sbjct: 8   LAQYAAYHRDRRNIFSHFIGIPMIVLSIAVLLARPALGFGLSPALL--LALAAALFYLRL 65

Query: 83  SPPFAVGMLAMSALMLVLLARLPLG---AVLPVSAVVFVLAWIGQFIGHRIEGKKPSFFE 139
              F V M A+ AL +   A+L  G   A L     +FV+ WI QF+GH  EG+KP+F +
Sbjct: 66  DLRFGVAMTALLALTVWGAAQLAAGTTAAWLGWGVGLFVVGWIIQFVGHYYEGRKPAFVD 125

Query: 140 DLRFLLVGPLFVLAFL 155
           DL  L+VGPLFVLA L
Sbjct: 126 DLSGLIVGPLFVLAEL 141


>RSp0806 Non COG
          Length = 189

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 16/145 (11%)

Query: 23  RPIDALLARYAEHHRHPMNELIHCVCVPAI-----------VFSLLGLCWMISPAVSLLV 71
           RP+   L+ YA +H+   N   H   +P I           V  LL     ++PA+ LLV
Sbjct: 13  RPLSDHLSSYAAYHQDGRNIATHFFGIPVIVVAVAVLFSRPVLGLLPGGVAVTPALLLLV 72

Query: 72  VAAALAYYLRLSPPFAVGMLAMSALMLVL---LARLPLGAVLPVSAVVFVLAWIGQFIGH 128
             A   +YLRL   F + ML +  + + +   +A     A L V   +FV+ WI QF+GH
Sbjct: 73  --AVTVFYLRLDVVFGLAMLGLIGMAVWVGHHVAAHSTVAWLSVGLGLFVIGWIVQFVGH 130

Query: 129 RIEGKKPSFFEDLRFLLVGPLFVLA 153
             EG+KP+F +DL  L++GPLF+LA
Sbjct: 131 YYEGRKPAFVDDLAGLVIGPLFLLA 155


>SPAC16E8.02 [S] COG4539 Predicted membrane protein Spo Schizosaccharomyces
           pombe
          Length = 222

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 26/144 (18%)

Query: 32  YAEHHRHPMNELIHCVCVPA-----------IVFSLLGLCWMISPAVSLLVVAAALAYYL 80
           YA +H +P+N  IH VC+P             V +L+     I+  V+ LV  A   +Y+
Sbjct: 11  YAAYHSNPVNIKIHQVCIPLLLLTALVLLHNFVITLINSKLQIN--VAHLVGLAYQIFYV 68

Query: 81  RLSPPFAVGMLAMSALMLV-------LLARLPLGAVLPVSAVVFVLAWIGQFIGHRI-EG 132
            L P    G+L    L L        L        V   +AVV V+ WI QFIGH + E 
Sbjct: 69  TLDP--LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSAAVVHVICWILQFIGHGVFEK 126

Query: 133 KKPSFFEDL-RFLLVGPLFVLAFL 155
           +KP+  ++L + L + PLF  AFL
Sbjct: 127 RKPALLDNLIQSLFIAPLF--AFL 148


>YGL010w [S] COG4539 Predicted membrane protein Sce Saccharomyces cerevisiae
          Length = 174

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 29  LARYAEHHRHPMNELIHCVCVPAIVFSLLGLCWM----ISPAVSLLVVAAAL--AYYLRL 82
           L  Y  +H +P N LIH + VP I+FS  G C +    I  ++SL  V + L   +Y  L
Sbjct: 12  LGFYKFYHHNPKNVLIHSIFVPTILFS--GSCMLHRVKIYQSISLTAVLSVLFSIFYCLL 69

Query: 83  SPPFAVGMLAMSALMLVLLARLPLGAVLPVSAVVFVLAWIGQFIGHRI-EGKKPSFFEDL 141
             P  +    +  L+ + L    +         +F + WI QF+GH + E ++P+  ++L
Sbjct: 70  YLPTGLLAGVLLLLLNLALIDHRVDLTFKQELGLFTIGWIFQFVGHGVFEKRRPALIDNL 129

Query: 142 -RFLLVGPLFVL-AFLYR 157
            + L++ P F++  FL++
Sbjct: 130 VQSLVLAPYFIMFEFLFK 147


>VNG0230C [S] COG3356 Predicted membrane protein Hbs Halobacterium sp. NRC-1
          Length = 624

 Score = 33.1 bits (74), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 116 VFVLAWIGQFIGHRIEGKK--PSFFEDLRFLLVGPLFVLAF 154
           V VL +IG FIGH  EG +    FFE +    V P+ VL+F
Sbjct: 233 VSVLDFIGGFIGHIAEGTRELEDFFEQIGEEAVVPVTVLSF 273