BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1649.p         (152 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1907 [K] COG1396 Predicted transcriptional regulators Rso Ral...    67   1e-11
NMB1007 [K] COG1396 Predicted transcriptional regulators Nme Nei...    59   3e-09
Z2969 [K] COG1396 Predicted transcriptional regulators EcZ Esche...    55   5e-08
ECs2620 [K] COG1396 Predicted transcriptional regulators Ecs Esc...    55   5e-08
NMA1225 [K] COG1396 Predicted transcriptional regulators NmA Nei...    47   2e-05

>RSc1907 [K] COG1396 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 173

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 1   MSSNKSEFLTILGDRLAEERGRCGHTQKSVADQLEITARTQIKYEIGETAPDAYYLHGLG 60
           ++ + SE  + +G+RL EER R G +Q + A     +  +Q+ +E G   P+A +LH + 
Sbjct: 14  VNDDGSEKRSSIGERLKEERERLGFSQPAFAAIGGASKGSQLAWEKGTAMPNAEFLHDVA 73

Query: 61  EIGIDVTYVLTGVR-GATPSLEESELLSCFRAVDAGMRSALVQLLTGLSQMSKAAKKK 117
            +G+DV YV+TG R  A  S +E  +L+ +R +DA  R+ ++ L+ G+   ++   KK
Sbjct: 74  RVGVDVLYVITGRRDSALTSPDEEMVLAGYRQLDARGRTGVLALIGGMQPPAEKKVKK 131


>NMB1007 [K] COG1396 Predicted transcriptional regulators Nme Neisseria
           meningitidis MC58
          Length = 123

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 4   NKSEFLTILGDRLAEERGRCGHTQKSVADQLEITARTQIKYEIGETAPDAYYLHGLGEIG 63
           N S F    G+RL EER +   TQ  +A++  ++ R    YE G + P A       ++G
Sbjct: 2   NNSSFF---GNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQFEKVG 58

Query: 64  IDVTYVLTGVRGATPSL-------EESELLSCFRAVDAGMRSALVQL 103
           IDV YV+ G RG T  +       EE ELL  FR   A  R  ++ +
Sbjct: 59  IDVQYVMHGRRGETAVMPSETLNAEEQELLVLFREAAAADREMILMV 105


>Z2969 [K] COG1396 Predicted transcriptional regulators EcZ Escherichia
           coli O157:H7 EDL933
          Length = 134

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 26  TQKSVADQLEITARTQIKYEIGETAPDAYYLHGLGEIGIDVTYVLTGVRGA-TPSLEESE 84
           +Q +++D   +   TQ++YE G++ PDA YL  L   G+DV YV+ G+    T + +E E
Sbjct: 19  SQVAMSDIGGVKKLTQLRYEKGDSFPDAAYLAALSRFGLDVQYVVLGIHSPETYNDDEQE 78

Query: 85  LLSCFRAVDAGMRSALVQLLTG 106
           L++ FRA    +++A++  L G
Sbjct: 79  LITRFRAASLDVKNAVIGALKG 100


>ECs2620 [K] COG1396 Predicted transcriptional regulators Ecs Escherichia
           coli O157:H7
          Length = 134

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 26  TQKSVADQLEITARTQIKYEIGETAPDAYYLHGLGEIGIDVTYVLTGVRGA-TPSLEESE 84
           +Q +++D   +   TQ++YE G++ PDA YL  L   G+DV YV+ G+    T + +E E
Sbjct: 19  SQVAMSDIGGVKKLTQLRYEKGDSFPDAAYLAALSRFGLDVQYVVLGIHSPETYNDDEQE 78

Query: 85  LLSCFRAVDAGMRSALVQLLTG 106
           L++ FRA    +++A++  L G
Sbjct: 79  LITRFRAASLDVKNAVIGALKG 100


>NMA1225 [K] COG1396 Predicted transcriptional regulators NmA Neisseria
          meningitidis Z2491
          Length = 125

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 10 TILGDRLAEERGRCGHTQKSVADQLEITARTQIKYEIGETAPDAYYLHGLGEIGIDVTYV 69
          ++ G+RL E+R   G TQ   A++  I   T  KYE G   P    L     +GIDV+ +
Sbjct: 5  SLFGNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVFMPSGDVLLSFLNMGIDVSSL 64

Query: 70 LTGVRGATP------SLEESELLSCFR-AVDAG 95
              +G  P      S EESELL  +R A D G
Sbjct: 65 FAAEQGIRPSENSEISKEESELLGYYRQASDNG 97