BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1644.p (383 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1074 [E] COG0683 ABC-type branched-chain amino acid transport ... 125 1e-28 RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport... 108 3e-23 RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport... 103 7e-22 SMc01946 [E] COG0683 ABC-type branched-chain amino acid transpor... 103 7e-22 FN1432 [E] COG0683 ABC-type branched-chain amino acid transport ... 99 1e-20 >PA1074 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 373 Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 104/338 (30%), Positives = 160/338 (47%), Gaps = 17/338 (5%) Query: 5 TQAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLG 64 ++ F A A+ A S AAD IKI ++GP TG A G R G +A+ +IN AGGV G Sbjct: 9 SRLFAAMAIAGFASYSMAADTIKIALAGPVTGPVAQYGDMQRAGALMAIEQINKAGGVNG 68 Query: 65 RQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNV 124 Q++ V DD ++ V +A +++N + V VG + + + Y++ + +I Sbjct: 69 AQLEGVIYDDACDPKQAVAVANKVVN-DGVKFVVGHVCSSSTQPATDIYEDEGVLMITPS 127 Query: 125 ATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGRE 184 AT IT + K IFRT D +Q + ++ K +A+L D YG+ Sbjct: 128 ATAPEITSRGYK----LIFRTIGLDNMQGPVAGKFIAERYKDKTIAVLHDKQQYGEGIAT 183 Query: 185 DLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKL 244 +++K + D + E N D D A + K K+ G Q V G PE+ + ++ Sbjct: 184 EVKKTVEDAGIKVAVFEGLNAGDKDFNALISKLKKAGVQFVYFGGYHPEMGLLLRQAKQA 243 Query: 245 NWHVPIIGSWPLSMGNF----IDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKV 300 +G P +GN I G A +P+ F QD PK KA I+A+ KA Sbjct: 244 GLDARFMG--PEGVGNSEITAIAGDASEGMLATLPRAFEQD---PKNKALIDAF-KAKNQ 297 Query: 301 DRMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRAAL 338 D PS + Y ++ ++A I++AG D EKV AL Sbjct: 298 D--PSGIFVLPAYSAVTVIAKGIEKAGEADPEKVAEAL 333 >RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 377 Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 168/381 (44%), Gaps = 22/381 (5%) Query: 6 QAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG-GVLG 64 Q +VAAAL +L + A + IK+G + P TG A G M++GV LA+ E NA + G Sbjct: 5 QLWVAAALCALGSAASAQEVIKLGFAAPMTGAQAQYGKDMQNGVTLAIEEFNATKPKIAG 64 Query: 65 RQI--QLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVIN 122 + + QLV DD+A + G +AQ+L++ + VG N+G ++ + R Y +A I I Sbjct: 65 KDVKFQLVSEDDQADPKTGTTVAQKLVDG-GIKGMVGHFNSGTSIPASRVYNQAGIAQI- 122 Query: 123 NVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLG 182 +AT TKQ K FR +D Q ++ AV K + +AI+ D T YGQ Sbjct: 123 AMATAPEYTKQGYKT----TFRMMTSDTQQGSVVGTFAVKKLGYKNLAIVDDRTAYGQGL 178 Query: 183 REDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGME 242 ++ EK T V E N K D A L + K AV G + A + M Sbjct: 179 ADEFEKAAKAAGATIVRREYTNDKASDFKAILTQIKSKNPDAVFYGGAEGQSAPLVKQMR 238 Query: 243 KLNWHVPIIGSWPLSMGNFIDNSG-KNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKVD 301 +L ++ +FI +G G + P + + Y+K Sbjct: 239 ELGMKATLMSGEMSKTDDFIKLAGAPAAEGVVCSLAGLPLEQMPGGAGYKQRYEK----- 293 Query: 302 RMPSAVS--AAQGYDSILLLAAAIKQAGSTDGEKVRAALENLNTKVEGVVTTYDKPFTHD 359 R S V + YD + L A+ AGS+D K L N +GV K + +D Sbjct: 294 RFGSTVQTYSPYAYDGAMALMKAMVAAGSSDPSKYLPILAATN--AQGVTA---KHYAYD 348 Query: 360 DHEAIKASMVVMGEVKNGRVI 380 D +K + + +V G+ + Sbjct: 349 DKGDLKDGGITVYKVTGGKWV 369 >RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 386 Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 139/301 (46%), Gaps = 11/301 (3%) Query: 26 IKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQLVERDDEAKNERGVQIA 85 IKIGV+ +GG+A G ++R+G +LA EINA GG+ G +I LV D++ K E + + Sbjct: 30 IKIGVAEALSGGAAQYGAAIRNGFQLAADEINAGGGINGSKIALVIEDEQGKKEEAINVF 89 Query: 86 QELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTVITKQFEKEKDNYIFRT 145 ++LI ++KV G + A A+ Q AK V T IT +++FR Sbjct: 90 KKLIFQDKVALVFGPTLSNSAQAADPIAQGAKTVVFGTSNTADGIT-----SIGDHVFRN 144 Query: 146 SA--ADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGREDLEKVLADKKVTPVAVEKY 203 S AD + A I + + + + G ++ +K L D K+ A E + Sbjct: 145 SVTEADVLPA-TIQTVVKKAGVKKVAVLYGNDDVFTKSGYDNFKKALEDLKIPVTATETF 203 Query: 204 NIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKLNWHVPIIGSWPLSMGNFID 263 DVD AQL K K A++ + E I +L +VPIIG ++ D Sbjct: 204 AKGDVDFKAQLTKIKATNPDAIVLSALIAEGGPIMVQARQLGLNVPIIGGNGMNSVKVFD 263 Query: 264 NSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKVDRMPSAVSAAQGYDSILLLAAAI 323 + + + + + +TP+ FI AY YK P AAQ YD++ + A A+ Sbjct: 264 LARDKSDNLWVGSPWSIENHTPENSKFITAYTARYKA--APDQF-AAQAYDAMHIAAQAL 320 Query: 324 K 324 K Sbjct: 321 K 321 >SMc01946 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 372 Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 97/338 (28%), Positives = 154/338 (45%), Gaps = 13/338 (3%) Query: 4 KTQAFVAAALMSL-ALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGV 62 K A AL ++ A + A I +GV GP TG +A G ++ G + A +INAAGG+ Sbjct: 2 KKSLLSAVALTAMVAFSGTAWADILVGVGGPLTGPNAAFGAQLQKGAEQAAEDINAAGGI 61 Query: 63 LGRQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVIN 122 G QI++V DD + ++GV +AQ+ + + V VG N+GV++ + Y E I + Sbjct: 62 NGEQIKVVLGDDVSDPKQGVSVAQKFV-ADGVKFVVGHFNSGVSIPASEIYAENGILQVT 120 Query: 123 NVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLG 182 +T QF + FRT D Q + K +KVA++ D T YGQ Sbjct: 121 PAST----NPQFTERGLWNTFRTCGRDDQQGAVAGAYIAANFKDAKVAVIHDKTPYGQGL 176 Query: 183 REDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGME 242 ++ +K + + VT E N D D +A + K KQ G V G+ E I M+ Sbjct: 177 ADETKKSMNEAGVTEALYEGINTGDKDFSALIAKMKQAGVSIVYYGGLHTEAGLIMRQMK 236 Query: 243 KLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGN-TPKRKAFIEAYQKAYKVD 301 ++ + +G +G M TF D +P K +E ++ A Sbjct: 237 DQGLKATMMSGDGIVSNELASIAGDAVDGTLM--TFAPDPRKSPAAKDLVEKFRAA---G 291 Query: 302 RMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRAALE 339 P A + Y ++ ++A K AG+TD + V A++ Sbjct: 292 FEPEAYT-LYAYAALQVIAEGAKAAGNTDPQAVAEAIK 328 >FN1432 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Fnu Fusobacterium nucleatum Length = 383 Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 101/341 (29%), Positives = 164/341 (48%), Gaps = 16/341 (4%) Query: 19 TSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQLVERDDEAKN 78 +++ + IKIG GP TG A G+S +G+KLAV EINA GG+LG+Q++L D++ + Sbjct: 28 STKEDETIKIGAMGPLTGAVAIYGISATNGLKLAVDEINANGGILGKQVELNLLDEKGDS 87 Query: 79 ERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTVITKQFEKEK 138 V +L++ VV +G + + ++A + IP+I T IT E Sbjct: 88 TEAVNAYNKLVDWGMVV-LIGDVTSKPSVAVAEVAAQDGIPMITPTGTQLNIT-----EA 141 Query: 139 DNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGREDLEKVLADKK-VTP 197 + IFR D Q ++A A DK VAI++++++ G + A+K+ + Sbjct: 142 GSNIFRVCFTDPYQGVVLAKFAKDKLGAKTVAIMSNNSSDYSDGVANAFVTEAEKQGIQV 201 Query: 198 VAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKLNWHVPIIGS--WP 255 VA E Y+ D D AQL K Q + + IA ++ I+GS W Sbjct: 202 VAREGYSDGDKDFKAQLTKIAQQNPDILFIPDYYEQDGLIAIQAREVGLKSVIVGSDGWD 261 Query: 256 LSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKVDRMPSAVSAAQGYDS 315 + +S + + K + FI+ Y++ Y + PSA SA YD+ Sbjct: 262 GVVKTVDPSSYAAIEDVYFANHYSTKDSNEKIQNFIKNYKEKY--NDEPSAFSALS-YDT 318 Query: 316 ILLLAAAIKQAGSTDGEKVRAALENLNTKVEGVV--TTYDK 354 LL AAI++AG+TD E V A++ + + EG+ T+D+ Sbjct: 319 AYLLKAAIEKAGTTDKEAVTKAIKEI--QFEGITGQLTFDE 357