BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1635.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2053 [C] COG0839 NADH Rso Ralstonia solanacearum 236 4e-62 XF0314 [C] COG0839 NADH Xfa Xylella fastidiosa 9a5c 164 2e-40 NMA0006 [C] COG0839 NADH NmA Neisseria meningitidis Z2491 157 1e-38 NMB0253 [C] COG0839 NADH Nme Neisseria meningitidis MC58 157 2e-38 SMc01923 [C] COG0839 NADH Sme Sinorhizobium meliloti 155 5e-38 >RSc2053 [C] COG0839 NADH Rso Ralstonia solanacearum Length = 210 Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 118/195 (60%), Positives = 152/195 (77%), Gaps = 2/195 (1%) Query: 1 MEFKTVLFYAFSVILVIAALRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 ME T++FY FS++LV++AL+VITA+NPVHAALFLVLSFF+AA +WMLLKAEFLAI LVL Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWVSESQ 120 VYVGAVMVLFLFVVMM+D++++ LR FW Y P+ A +G +I++EMA VL ++F Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120 Query: 121 VPAASDTIG--QTKPLGKLIFTEYVYGFEIAAVILLVAIVAAVALTLRRRKDSKYFDPAQ 178 V + T+ LGKLI+T+Y+Y FE+A +LL+AIVAAVALT RRRKDSK + A Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQNVAD 180 Query: 179 AVKVKAADRVRLVSM 193 ++V+ DRVRLVSM Sbjct: 181 QIRVQRKDRVRLVSM 195 >XF0314 [C] COG0839 NADH Xfa Xylella fastidiosa 9a5c Length = 222 Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 137/201 (68%), Gaps = 4/201 (1%) Query: 1 MEFKTVLFYAFSVILVIAALRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 M++ + FY FS + V AA VI+ R+PV+A L L+L+FFS A +W+L+ AEFL + LVL Sbjct: 2 MDWVNIAFYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVL-LRSFWVSES 119 VYVGAVMVLFLFVVMMLDI+ +LREG+ Y P+ + +++++M ++ ++ + Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 121 Query: 120 QVPAASDTIGQTKPLGKL---IFTEYVYGFEIAAVILLVAIVAAVALTLRRRKDSKYFDP 176 V A+ T L L +FT++++ FE AAVIL VA++AAV LTLR+R+ K DP Sbjct: 122 PVDNAAAQAAHTSNLTWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 181 Query: 177 AQAVKVKAADRVRLVSMKAES 197 +Q +VKAADR+R+VSM E Sbjct: 182 SQQTRVKAADRLRIVSMPTEE 202 >NMA0006 [C] COG0839 NADH NmA Neisseria meningitidis Z2491 Length = 223 Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/221 (45%), Positives = 152/221 (68%), Gaps = 12/221 (5%) Query: 1 MEFKTVLFYAFSVILVIAALRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 M F+ +LFY F+VI++ A++ +TA+NPVHAAL LVL+F +A LWML++AEFL + LV+ Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVL------LRSF 114 VYVGAVMVLFLFVVMML+I+++++R GFW + P+A +G ++ + + +L L +F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 115 WVSESQVPAASDTIGQTKPLGKLIFTEYVYGFEIAAVILLVAIVAAVALTLRRRKDSKYF 174 + + +PA + I + LG I+T+Y+ FE+AAV+LL+ +VAA+AL R+ + K Sbjct: 121 GLMKD-IPADYNNI---RDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRM 176 Query: 175 DPAQAVKVKAAD-RVRLVSMKAESTRNEQPADAAAAAD-KP 213 DPA VKV+A R+RLV M+A + E ++ + D KP Sbjct: 177 DPADQVKVRADQGRMRLVKMEAVKPQTESAEESEVSDDLKP 217 >NMB0253 [C] COG0839 NADH Nme Neisseria meningitidis MC58 Length = 223 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 152/221 (68%), Gaps = 12/221 (5%) Query: 1 MEFKTVLFYAFSVILVIAALRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 M F+ +LFY F+VI++ AL+ +TA+NPVHAAL LVL+F +A LWML++AEFL + LV+ Sbjct: 1 MTFQLILFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVL------LRSF 114 VYVGAVMVLFLFVVMML+I+++++R GFW + P+A +G ++ + + +L L +F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 115 WVSESQVPAASDTIGQTKPLGKLIFTEYVYGFEIAAVILLVAIVAAVALTLRRRKDSKYF 174 + + +PA + I + LG I+T+Y+ FE+AAV+LL+ +VAA+AL R+ + K Sbjct: 121 GLMKD-IPADYNNI---RDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRM 176 Query: 175 DPAQAVKVKAAD-RVRLVSMKAESTRNEQPADAAAAAD-KP 213 DPA VKV+A R+RLV M+A + E ++ + D KP Sbjct: 177 DPADQVKVRADQGRMRLVKMEAVKPQVESAEESEVSDDLKP 217 >SMc01923 [C] COG0839 NADH Sme Sinorhizobium meliloti Length = 204 Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 91/200 (45%), Positives = 130/200 (65%), Gaps = 7/200 (3%) Query: 1 MEFKTVLFYAFSVILVIAALRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 M + + FY F+ I V +A VI ARNPV++ LFL+L+FF+AAGL++L AEFLA++L++ Sbjct: 1 MGLQALFFYLFAFIAVASAFMVIAARNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWVSE-- 118 VYVGAV VLFLFVVMMLDI+ +LR G Y P+ A IG+I+ E+ V+ S + E Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGALIGLILAAELIVVVGGSAFSPEIA 120 Query: 119 ----SQVPAASDTIGQTKPLGKLIFTEYVYGFEIAAVILLVAIVAAVALTLRRRKDSKYF 174 +PA S+ T LG +++T YVY F+IA ++LLVA++ A+ LTLR R++ K Sbjct: 121 KGIAMPIPAPSERT-NTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHRQNIKRQ 179 Query: 175 DPAQAVKVKAADRVRLVSMK 194 Q V V +V++K Sbjct: 180 SIPQQVARTPETAVEVVTVK 199