BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1622.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1721 [K] COG5631 Predicted transcription regulator, contains ...   177   9e-45
BMEII0603 [K] COG5631 Predicted transcription regulator, contain...   164   7e-41
mlr3446 Non COG                                                        67   2e-11
MA1634 [QR] COG0500 SAM-dependent methyltransferases Mac Methano...    35   0.061
CAC0952 Non COG                                                        33   0.29 

>RSc1721 [K] COG5631 Predicted transcription regulator, contains HTH domain
           (MarR family) Rso Ralstonia solanacearum
          Length = 188

 Score =  177 bits (449), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 95/163 (58%), Positives = 121/163 (74%)

Query: 9   IVSSQHLVSERSAELSELEYALIMASNAFNRWMVRCMAAAGAKDMTAIEVSLLHHVNHRE 68
           IVSS HLVS RS ELSE E+AL  A NA++RW VRCMAAAG +D+T ++V ++HHVNHR 
Sbjct: 26  IVSSAHLVSARSPELSEFEFALNTAYNAYHRWCVRCMAAAGVRDLTFLDVLVVHHVNHRG 85

Query: 69  RKKKLADICFVLNVEDTHVVTYALKKLVKAGYVKSEKAGKELLFSTTAEGQALCMKYREV 128
           R K+LADICFVLNVEDTH+VTY+LKKL     V+  + GKE+ ++TTA G+  C +YRE+
Sbjct: 86  RAKRLADICFVLNVEDTHLVTYSLKKLQALELVEGTRNGKEVTYTTTATGETACARYREI 145

Query: 129 RERCLIEVQVESGIPNQAIGEAAQLLRNASGLYDTAARAAASL 171
           RE+CL       G  N  IGE A+L+R  +GLY+ AAR+A SL
Sbjct: 146 REQCLTSNISPGGEENAEIGELARLMRVLTGLYEQAARSATSL 188


>BMEII0603 [K] COG5631 Predicted transcription regulator, contains HTH domain
           (MarR family) Bme Brucella melitensis
          Length = 199

 Score =  164 bits (416), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 110/163 (67%)

Query: 9   IVSSQHLVSERSAELSELEYALIMASNAFNRWMVRCMAAAGAKDMTAIEVSLLHHVNHRE 68
           IVSS HL    S  +SE+EY LI+AS+AF+RWMVRCMAAAG   ++ IE+ +LH + HR+
Sbjct: 37  IVSSAHLAEGGSPAMSEVEYGLILASHAFSRWMVRCMAAAGLPGLSPIEILILHSIRHRD 96

Query: 69  RKKKLADICFVLNVEDTHVVTYALKKLVKAGYVKSEKAGKELLFSTTAEGQALCMKYREV 128
           R+KKLADIC  L++EDTH+ TYA++KL KAG + + KA KE     TA+G   C  Y ++
Sbjct: 97  REKKLADICLALDIEDTHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQI 156

Query: 129 RERCLIEVQVESGIPNQAIGEAAQLLRNASGLYDTAARAAASL 171
           RER L++    +    + + E A LLR  SG ++ A R+A +L
Sbjct: 157 RERLLVDSTANARPSEETLSELAALLRFMSGAFNQATRSAITL 199


>mlr3446 Non COG
          Length = 233

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 5/144 (3%)

Query: 22  ELSELEYALIMASNAFNRWMVRCMAAAGAKDMTAIEVSLLHHVNHRERKKKLADICFVLN 81
           +++E+EYAL+ +  AF  W   C+A       +  E +LLH +   +R K + D+  + N
Sbjct: 64  DVTEVEYALMRSYEAFGHWQAECLATVIEFSASGPENALLHIIRMNDRPKSVRDLAQMTN 123

Query: 82  VEDTHVVTYALKKLVKAGYVKSEKAGKE-LLFSTTAEGQALCMKYREVRERCLIEVQVES 140
            +D   + Y+L+KL+K G +    +G+  + +  T  G  +  +Y ++R   LI+     
Sbjct: 124 RDDIPNIQYSLRKLLKGGLITRTGSGRAGVTYEVTPLGHRVTERYADIRSVLLIDAVTR- 182

Query: 141 GIPNQA--IGEAAQLLRNASGLYD 162
            IP  A  + + A+ L   +G+Y+
Sbjct: 183 -IPEMADKLEDVARTLELMTGIYE 205


>MA1634 [QR] COG0500 SAM-dependent methyltransferases Mac Methanosarcina
           acetivorans str.C2A
          Length = 226

 Score = 35.4 bits (80), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 60  LLHHVNHRERKKKLADICFVLNVEDTHV-VTYALK--KLVKAGYVKSEKAGKELLFSTTA 116
           LLHH+   +R+K + ++C VL     +  V ++ K  +  +AG  +  K G  L FS+ +
Sbjct: 130 LLHHIFPEDREKYIKNVCNVLKPGALYFSVCFSEKDPQFGEAGKFQKTKLGTTLYFSSES 189

Query: 117 EGQALCMKYREVRERCLIEVQ 137
           E + L   Y  ++E   IE++
Sbjct: 190 EIRDLLSPYFVIQELKTIEIK 210


>CAC0952 Non COG
          Length = 114

 Score = 33.1 bits (74), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 80  LNVEDTHVVTYALKKLVKAGYVKSEKAGKELLFSTTAEGQALCMKYREVRERCLIEVQVE 139
           +N+   H +TYA    + +G   + K  K           +  +K+    E  L    +E
Sbjct: 30  INLNKLHDITYAADYYMTSGVFNTHKLYKV---------DSYNLKFSSNDESILFVSGIE 80

Query: 140 SGIPNQAIGEAAQLLRNASGLY 161
           S  P++ I     +LRN+SG++
Sbjct: 81  SKSPHKTITYKLTMLRNSSGIW 102