BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1621.p (217 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstoni... 246 3e-65 ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia... 218 1e-56 ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichi... 218 1e-56 ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escheric... 218 1e-56 STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonel... 218 1e-56 >RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstonia solanacearum Length = 215 Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 121/210 (57%), Positives = 149/210 (70%), Gaps = 1/210 (0%) Query: 6 LHPLGDRALLCSLPAPATLPQQQRIWALAELAGSWDEVSEVVPGMNNLTLITKRPVLDLD 65 +H LG+ ALLC +P PATL QQRIWA+A A W V +VVPGMNNLTL+ P D Sbjct: 5 IHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFG-PQADAQ 63 Query: 66 SLAQRITKTWPKLSGERSTGRTVEIPVVYGGAAGPDLEHVARHTGLSVDEVIERHSGADY 125 +L + + W + + G+ ++I V YGG GPDL VA HTGLS EV+ RH+ +Y Sbjct: 64 ALTALLREAWQESGALIADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTAPEY 123 Query: 126 VVYFIGFLPGFAYLGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPGGWQLIG 185 +VYF+GFLPGFAY+GGLD SLATPR PR+++PAGSVGIGGEQTGIYP ASPGGWQL+G Sbjct: 124 IVYFLGFLPGFAYMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGWQLLG 183 Query: 186 RTSLCLFNPDQEAPTLLRPGDRVRFTVERV 215 RT LF P ++ P LL PGDR+RF +V Sbjct: 184 RTDAALFLPQRDPPALLAPGDRIRFVASKV 213 >ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia coli K12 Length = 218 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 2/215 (0%) Query: 1 MQPPHLHPLGDRALLCSLPAPATLPQQQRIWALAELAGSWDEVSEVVPGMNNLTLITKRP 60 MQ + +G+ A++ L P TL Q+RIW LA+ V E +PGMNN+T+I + P Sbjct: 1 MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP 60 Query: 61 -VLDLDSLAQRITKTWPKLSGERSTGRTVEIPVVYGGAAGPDLEHVARHTGLSVDEVIER 119 L LD++ +R+ + W + R +EIPVVYGGA GPDL VA H GLS +V+E Sbjct: 61 ESLALDAI-ERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVEL 119 Query: 120 HSGADYVVYFIGFLPGFAYLGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPG 179 HS +YVV+F+GF PGF YLG L L TPR PR+ +PAGSVGIGG QTG+YP+A+PG Sbjct: 120 HSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPG 179 Query: 180 GWQLIGRTSLCLFNPDQEAPTLLRPGDRVRFTVER 214 GWQLIG TSL LF+P ++ P LLRPGD VRF ++ Sbjct: 180 GWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQK 214 >ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichia coli O157:H7 EDL933 Length = 218 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 2/215 (0%) Query: 1 MQPPHLHPLGDRALLCSLPAPATLPQQQRIWALAELAGSWDEVSEVVPGMNNLTLITKRP 60 MQ + +G+ A++ L P TL Q+RIW LA+ V E +PGMNN+T+I + P Sbjct: 1 MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP 60 Query: 61 -VLDLDSLAQRITKTWPKLSGERSTGRTVEIPVVYGGAAGPDLEHVARHTGLSVDEVIER 119 L LD++ +R+ + W + R +EIPVVYGGA GPDL VA H GLS +V+E Sbjct: 61 ESLALDAI-ERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVEL 119 Query: 120 HSGADYVVYFIGFLPGFAYLGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPG 179 HS +YVV+F+GF PGF YLG L L TPR PR+ +PAGSVGIGG QTG+YP+A+PG Sbjct: 120 HSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPG 179 Query: 180 GWQLIGRTSLCLFNPDQEAPTLLRPGDRVRFTVER 214 GWQLIG TSL LF+P ++ P LLRPGD VRF ++ Sbjct: 180 GWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQK 214 >ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escherichia coli O157:H7 Length = 218 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 2/215 (0%) Query: 1 MQPPHLHPLGDRALLCSLPAPATLPQQQRIWALAELAGSWDEVSEVVPGMNNLTLITKRP 60 MQ + +G+ A++ L P TL Q+RIW LA+ V E +PGMNN+T+I + P Sbjct: 1 MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP 60 Query: 61 -VLDLDSLAQRITKTWPKLSGERSTGRTVEIPVVYGGAAGPDLEHVARHTGLSVDEVIER 119 L LD++ +R+ + W + R +EIPVVYGGA GPDL VA H GLS +V+E Sbjct: 61 ESLALDAI-ERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVEL 119 Query: 120 HSGADYVVYFIGFLPGFAYLGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPG 179 HS +YVV+F+GF PGF YLG L L TPR PR+ +PAGSVGIGG QTG+YP+A+PG Sbjct: 120 HSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPG 179 Query: 180 GWQLIGRTSLCLFNPDQEAPTLLRPGDRVRFTVER 214 GWQLIG TSL LF+P ++ P LLRPGD VRF ++ Sbjct: 180 GWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQK 214 >STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonella typhimurium LT2 Length = 218 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 110/215 (51%), Positives = 144/215 (66%), Gaps = 2/215 (0%) Query: 1 MQPPHLHPLGDRALLCSLPAPATLPQQQRIWALAELAGSWDEVSEVVPGMNNLTLITKRP 60 MQ + LG+ A++ L P TL Q+RIW L + V E +PGMNN+T+I + P Sbjct: 1 MQRARCYLLGETAVVLELEPPITLASQKRIWRLTQRLVDMPNVVEAIPGMNNITVILREP 60 Query: 61 -VLDLDSLAQRITKTWPKLSGERSTGRTVEIPVVYGGAAGPDLEHVARHTGLSVDEVIER 119 L LD++ +R+ + W + R+VEIPV+YGGA GPDL VARH+GLS +V+E Sbjct: 61 QTLALDAI-ERLQRWWEESEALEPDSRSVEIPVIYGGAGGPDLAAVARHSGLSEKQVVEL 119 Query: 120 HSGADYVVYFIGFLPGFAYLGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPG 179 H+ +YVV+F+GF PGF YLG L L PR PR+ +PAGSVGIGG QTGIYP+++PG Sbjct: 120 HASVEYVVWFLGFQPGFPYLGNLPEPLHMPRRAEPRLQVPAGSVGIGGAQTGIYPLSTPG 179 Query: 180 GWQLIGRTSLCLFNPDQEAPTLLRPGDRVRFTVER 214 GWQLIG T L LF+P +E P LLRPGD VRF ++ Sbjct: 180 GWQLIGLTPLKLFDPMRETPVLLRPGDSVRFVPQK 214