BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1616.p         (334 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1198 Non COG                                                        274   2e-73
Cj0554 Non COG                                                        243   5e-64
CAC3195 [J] COG0423 Glycyl-tRNA synthetase (class II) Cac Clostr...    31   3.9  
XF2169 [R] COG0457 FOG Xfa Xylella fastidiosa 9a5c                     31   4.7  
AGl99 [G] COG1023 Predicted 6-phosphogluconate dehydrogenase Atu...    30   7.7  

>CC1198 Non COG
          Length = 331

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/336 (44%), Positives = 202/336 (60%), Gaps = 8/336 (2%)

Query: 1   MQLTIERAEAFARMPLTYLRQEYPNHIMHLLNGPEDVLSPRAMHPVFYGCYDWHSAVHGY 60
           M L    A  FA++ L +L +EYPN + H++ G +DV SPR +HP+FYG +DWHS VHGY
Sbjct: 1   MSLARSTASRFAKIALGHLTREYPNKLDHVMGGSDDVRSPRDLHPIFYGSFDWHSCVHGY 60

Query: 61  WLLLRCLRLYPGLPAADEITALFDEHFTPDLMERETDYFRAPNRAPFERPYGFAWLLALD 120
           WLL   LRL P +  A  I ALFD+ FT + +  E  Y   P    FERPYG+AW L L 
Sbjct: 61  WLLATLLRLRPEMSEAPTIIALFDDAFTQEKVAGEVAYLARPESRGFERPYGWAWSLMLQ 120

Query: 121 QELLVSAHPQARQWHTAMQPLTTEIRRRLLDYLSKLSYPIRVGAHFNTAFSLALSLDYAH 180
            ELL    P    W     PL    ++R   +L    YP+R G H+NTAF+LAL+ ++A 
Sbjct: 121 AELLRHDRP----WAQTHAPLALAFKQRFETFLPIADYPVRAGTHYNTAFALALAYEFAE 176

Query: 181 HVQDSELESVIIDWSQRHYGADTDYPAQYEPGGDEFISGALTEALLMSKVMNAEVFPVWF 240
              D     ++ + +   YG D D  A +EP GD+F+S AL EA  M +++  E F +WF
Sbjct: 177 MTGDQAFFDLLQNRALVWYGQDADCQA-WEPSGDDFLSPALMEAEAMRRLLPRERFDLWF 235

Query: 241 DQYLPRVAEV--AQLMQPAHVSDPTDPKVAHLDGLNLSRAWCMKQVLRHLSTQHPARAAL 298
            ++LP +A+   A L  PA VSD TD K+AHLDGLNLSRAWC + +   +S   PA+A  
Sbjct: 236 PRFLPSLADKQPATLFTPARVSDRTDGKIAHLDGLNLSRAWCWRLLAGSMSEHDPAQAHA 295

Query: 299 EASAQRHIAASLDQVIGSHYSGGHWLATFAVLALED 334
             +A  H+AA++  + G  Y G HWLATFA+LALE+
Sbjct: 296 VNAAMSHLAAAVPHLAGD-YMGEHWLATFALLALEN 330


>Cj0554 Non COG
          Length = 334

 Score =  243 bits (620), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 129/329 (39%), Positives = 188/329 (57%), Gaps = 8/329 (2%)

Query: 9   EAFARMPLTYLRQEYPNHIMHLLNGPEDVLSPRAMHPVFYGCYDWHSAVHGYWLLLRCLR 68
           + F+ + L  + +E PN I H  N   D+  P+ M+P+FYG YDWHS+VH +WLL++ L+
Sbjct: 6   KQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIFYGSYDWHSSVHSHWLLVKILK 65

Query: 69  LYPGLPAADEITALFDEHFTPDLMERETDYFRAPNRAPFERPYGFAWLLALDQE--LLVS 126
            +      DEI    D  F+ +  E E  Y + P    FERPYG+ W L L  E  LL  
Sbjct: 66  DFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHKGFERPYGWGWFLKLTLEINLLAK 125

Query: 127 AHPQARQWHTAMQPLTTEIRRRLLDYLSKLSYPIRVGAHFNTAFSLALSLDYAHHVQDSE 186
            + +A  W   ++ +     +   ++L K+ YPIRVG HFN++F+L  +L+YA   +D E
Sbjct: 126 ENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIRVGTHFNSSFALYFALEYARFKKDQE 185

Query: 187 LESVIIDWSQRHYGADTDYPAQYEPGGDEFISGALTEALLMSKVMNAEVFPVWFDQYLPR 246
           LE  II  +++ +  D +  A  EP GDEF+S  L EA+L+S V++   F  +F  YLP 
Sbjct: 186 LEYCIIQSAKKWFLNDKNMQA-LEPCGDEFLSPVLMEAVLLSAVLHKNDFVKFFKAYLPN 244

Query: 247 V--AEVAQLMQPAHVSDPTDPKVAHLDGLNLSRAWCMKQVLRHLSTQHPARAALEASAQR 304
           +   E A L  P  VSD +D K+AHLDGLNLSRAWC K +L +   ++  +  L  +A  
Sbjct: 245 LEAKEPATLFTPVSVSDRSDGKIAHLDGLNLSRAWCFK-ILSNFCDEN-LKILLRNNATE 302

Query: 305 HIAASLDQVIGSHYSGGHWLATFAVLALE 333
           H   ++   I   Y G HWL +FA+LAL+
Sbjct: 303 HFDKAIAH-IEDDYLGSHWLGSFALLALD 330


>CAC3195 [J] COG0423 Glycyl-tRNA synthetase (class II) Cac Clostridium
           acetobutylicum
          Length = 462

 Score = 31.2 bits (69), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 120 DQELLVSAHPQARQWHTAMQPLTTEIRRRLLDYLSKLSYPIRVGAHFNTAFSLALSLDYA 179
           DQ +++  HPQ      A+ PL+ ++  + LD  SK+S      + FN  +    S+   
Sbjct: 357 DQRIVLHFHPQIAPIKAAVLPLSKKLSEKALDVYSKIS------SKFNIEYDETGSIGKR 410

Query: 180 HHVQD 184
           +  QD
Sbjct: 411 YRRQD 415


>XF2169 [R] COG0457 FOG Xfa Xylella fastidiosa 9a5c
          Length = 698

 Score = 30.8 bits (68), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 16/67 (23%)

Query: 266 KVAHLDGLNLSRAWCMKQVLRHLSTQHPARAALEASAQRHIAASLDQVIGSHYSGGHWLA 325
           + AH + L+L+RAWC             A A  EA AQR +AA+L Q  G H +     A
Sbjct: 19  RQAHAEALSLARAWC-------------ASAPGEAQAQRWLAAALQQY-GEHKAA--LTA 62

Query: 326 TFAVLAL 332
           + A LAL
Sbjct: 63  SEAALAL 69


>AGl99 [G] COG1023 Predicted 6-phosphogluconate dehydrogenase Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 334

 Score = 30.0 bits (66), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 151 DYLSKLSYPIRVGAHFNTAFSLALSLDYAHHVQDSELESVIIDWSQRHYGADTDYPAQYE 210
           D ++KLS P  V      A +  ++ D+A  +Q  +    IID    +Y    D  A++ 
Sbjct: 52  DLVAKLSPPRAVWLMLPAAITPKIARDFAARLQAGD---AIIDGGNSNYRDAIDLAAEFA 108

Query: 211 PGGDEFI 217
           P G +FI
Sbjct: 109 PRGIDFI 115