BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1587.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PAE0506 Non COG                                                        33   0.19 
PAE2498 Non COG                                                        32   0.31 
ECU03g1610 Non COG                                                     28   5.0  
YPO3711 [G] COG4580 Maltoporin (phage lambda and maltose recepto...    28   5.5  
aq_2001 [N] COG1345 Flagellar capping protein Aae Aquifex aeolicus     28   6.5  

>PAE0506 Non COG
          Length = 243

 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 44  GKKIDGAVQDAGKKLDEVTGQAKDQTTESGSKLDSALDKAKADAQEAYEKTKEGAKDLAQ 103
            K+ID  +Q+ G+K+DE   +      E G ++D    +  A AQE   +  E    + +
Sbjct: 147 NKRIDAIIQELGRKIDETNQRIDAVAQELGKRIDETNKRIDAIAQELGRRIDETNNKIDK 206

Query: 104 KTGEKMQEAGQKLQDASKK 122
            T    QE G+++ + +K+
Sbjct: 207 VT----QELGRRIDETNKR 221



 Score = 30.4 bits (67), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 44  GKKIDGAVQDAGKKLDE-------VTGQAKDQTTESGSKLDSALDKAKADAQEAYEKTKE 96
            ++ID  VQ+  +++DE       +T +   +  E+  ++D+ + +      E  ++  E
Sbjct: 86  NQRIDSVVQELNRRIDETNKRIDAITQELSRRIDENNKRIDTVVQELNRRIDETNQRIDE 145

Query: 97  GAKD---LAQKTGEKMQEAGQKL 116
             K    + Q+ G K+ E  Q++
Sbjct: 146 TNKRIDAIIQELGRKIDETNQRI 168


>PAE2498 Non COG
          Length = 303

 Score = 32.0 bits (71), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 37  PGPA-EALGKKIDGAVQDAGKKLDEVTGQAKDQTTESGSKLDSALDKAKADAQEAYEKTK 95
           P PA EA+ K +D   Q A K+++++  +  +    +G   ++A +KAK  A+ A EK K
Sbjct: 217 PLPAREAIAKHVDRIKQIAAKQIEKIMEKIAEVKKIAGEARNTA-EKAKEKAENASEKGK 275

Query: 96  EGAKDLAQK---TGEKMQE 111
           E AK+ A+K   T EK +E
Sbjct: 276 EMAKEAAEKGRETAEKAKE 294


>ECU03g1610 Non COG
          Length = 166

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 35  EEPGPAEALGKKIDGAVQDAGKKLDEVTGQAKDQTTESGSKLDSALDKAKADAQEAYEKT 94
           E    ++  G K +    +A  K  E  G AKD+T E+     SA DK K  A+ A +KT
Sbjct: 10  EHNSDSQCEGCKANDKACEARDKTKETAGSAKDKTKETAG---SAKDKTKETAESAKDKT 66

Query: 95  KEGAKDLAQKTGEKMQEAGQKLQD 118
           KE A     KT E  + A  K ++
Sbjct: 67  KETAGSAKDKTKETAESAKDKTKE 90



 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 34  KEEPGPAEALGKKIDGAVQDAGK--------KLDEVTGQAKDQTTESGSKLDSALDKAKA 85
           KE  G A+   K+  G+ +D  K        K  E  G AKD+T E+    +SA DK K 
Sbjct: 34  KETAGSAKDKTKETAGSAKDKTKETAESAKDKTKETAGSAKDKTKETA---ESAKDKTKE 90

Query: 86  DAQEAYEKTKEGAKDLAQKTGE 107
            A  A +KTKE A+    KT E
Sbjct: 91  TAGSAKDKTKETAESAKDKTKE 112


>YPO3711 [G] COG4580 Maltoporin (phage lambda and maltose receptor) Ype
           Yersinia pestis
          Length = 423

 Score = 28.1 bits (61), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 70  TESGSKLDSALDKAKADAQEAYEKTKEGAKDLAQKTGEKMQ 110
           T  G  L+  +D  +AD QE Y      +KD    T E  Q
Sbjct: 204 TNPGGSLELGVDYGRADTQEGYSLAPNASKDGVMLTAEHTQ 244


>aq_2001 [N] COG1345 Flagellar capping protein Aae Aquifex aeolicus
          Length = 441

 Score = 27.7 bits (60), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 19/111 (17%)

Query: 9   NKISKLLVGLTVSVAAISMLAACQKKEEPGPAEALGKKIDGAVQDAGKKLDEVTGQAKDQ 68
           N I  +  GL+ ++  +  L   + KE            DG +  +G  L+ V  +  D 
Sbjct: 303 NTIMNVKYGLSDTLTPLMELGLIEYKE------------DGTISLSGN-LESVINEKPD- 348

Query: 69  TTESGSKLDSALDKAKADAQ---EAYEKTKEGAKDLAQKTGEKMQEAGQKL 116
             E   K+   L+ AKA A+   EA+E  KE   D A++  E ++   Q+L
Sbjct: 349 --EFKLKMTQFLESAKAVAKVNYEAFEDFKEYLNDQAERIDENIRLLSQRL 397