BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1583.p         (102 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa0572 [R] COG3668 Plasmid stabilization system protein Sme Sin...    50   1e-06
XF2066 [R] COG3668 Plasmid stabilization system protein Xfa Xyle...    42   2e-04
all7155 [R] COG3668 Plasmid stabilization system protein Nos Nos...    38   0.005
RSc3224 [R] COG3668 Plasmid stabilization system protein Rso Ral...    38   0.006
msr9263 [R] COG3668 Plasmid stabilization system protein Mlo Mes...    33   0.19 

>SMa0572 [R] COG3668 Plasmid stabilization system protein Sme
          Sinorhizobium meliloti
          Length = 107

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 8  VAQGDILDISDYYAERSPT-LAERFIEELILTLHGLTRQPDMGSRRYAHLLPDRSLCMWQ 66
          +A+ D+    DYYA  + T +   FI  L      +   P+ GS RYA+ L    L    
Sbjct: 9  LARSDVEAAIDYYAREAGTEVTHGFIGALQAAYASIASHPEAGSLRYAYELGLPDLRSVS 68

Query: 67 LDHFPYLLFYRNKDETLHLLRVLHERR 93
          L  +PYL+FYR++ + + + RVLH +R
Sbjct: 69 LKRYPYLIFYRDQPDHVDVWRVLHAKR 95


>XF2066 [R] COG3668 Plasmid stabilization system protein Xfa Xylella
          fastidiosa 9a5c
          Length = 102

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 2  RIRLSPVAQGDILDISDYYAERSPTLAERFIEELILTLHGLTRQPDMGSRRYAHLLPD-- 59
          RI+  P A  D+ DI  Y  + +PT A  F +EL      L + P++G R     LPD  
Sbjct: 9  RIKWRPKASEDLRDIVRYIGKNNPTRARSFGQELRDKTLPLAQHPEIG-RTGRPGLPDYV 67

Query: 60 RSLCMWQLDHFPYLLFYRNKDE--TLHLLRVLH 90
          R L      H  Y++FYR  DE  T+ +LRV H
Sbjct: 68 RELVT----HRNYIVFYRVLDETRTVEILRVKH 96


>all7155 [R] COG3668 Plasmid stabilization system protein Nos Nostoc sp. PCC
           7120
          Length = 111

 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 24  SPTLAERFIEELILTLHGLTRQPDMGSRRYAHLLPDRSLCMWQLDHFP-YLLFYRNKDET 82
           +  +A +F+     T   L + P MG      +     +  W++  F  YL+FYR ++ T
Sbjct: 28  NADVAVKFLNAAETTFAQLQKNPGMGKVTQLVVSKLGEIRQWRVKDFQDYLVFYRIQNTT 87

Query: 83  LHLLRVLHERRALSRAIIE 101
           + +LRV H  R L+  + E
Sbjct: 88  IEILRVFHGARDLANILSE 106


>RSc3224 [R] COG3668 Plasmid stabilization system protein Rso Ralstonia
          solanacearum
          Length = 99

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1  VRIRLSPVAQGDILDISDYYAERSPTLAERFIEELILTLHGLTRQPDMGSRRYAHLLPDR 60
          +R+ ++P+A+ D+  I+DY A+ +P  A  F+ +L      L   P  G R    L  D 
Sbjct: 1  MRLAITPLAEQDLESIADYIAQDNPARAVTFVRDLREQCQRLVMNPP-GYRLRPELGDDI 59

Query: 61 SLCMWQLDHFPYLLFYRNKDETLHLLRVLHERRAL 95
            C +      Y++F+    + + ++R+LH  R L
Sbjct: 60 RSCAYGR----YVIFFVAAPDEVIVIRILHGARDL 90


>msr9263 [R] COG3668 Plasmid stabilization system protein Mlo
          Mesorhizobium loti
          Length = 98

 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 3  IRLSPVAQGDILDISDYYAERSPTLAERFIEELILTLHGLTRQPDMGSRRYAHLLPD-RS 61
          +  S  A+ D+  I+ Y A+ +P  A  FI+EL      L   P     + + L+P    
Sbjct: 3  VEFSDEAESDLERIAAYIAKDNPRRALSFIQELRGKCEALAETP-----KGSPLVPRYEQ 57

Query: 62 LCMWQLDHFPYLLFYRNKDETLHLLRVLH 90
            + +  H  YL+FYR + E + ++ VLH
Sbjct: 58 HGIRRRVHGGYLIFYRVEREQIVIIHVLH 86