BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1574.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1145 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 220 3e-57 PA0289 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 178 1e-44 PA1422 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 171 2e-42 PA0133 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 164 2e-40 mlr6990 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 135 1e-31 >PA1145 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 300 Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 174/299 (58%), Gaps = 5/299 (1%) Query: 1 MLNNVFDLDLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRA 60 ML NV DLDLRL+R+F VV G +AAQA LN+ QS IS + +LE RLG+RLCERG+ Sbjct: 1 MLRNVTDLDLRLLRIFACVVKCGGFTAAQAELNMSQSNISMHIASLEKRLGYRLCERGKG 60 Query: 61 GFKLTAKGEKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVI 120 GF+LTAKG + +++R M DA+ F +A+ L RLVG+L +GL + AR + Sbjct: 61 GFRLTAKGRRVLEASRTMFDAIGLFRDQAQALSGRLVGELYLGLADNLATLPQARFGDAL 120 Query: 121 RAFRQRDEAVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQERQVAYCA 180 F++RD+ V++ L V +P ELE ++ G + +AI YF R +L+Y PL +E +C Sbjct: 121 ARFQRRDQDVQLNLFVNSPTELELAVIEGELDLAISYFSRSRPSLEYRPLYREEIGVFCG 180 Query: 181 PPHPLFEQPGEIDPEQAVQYAWAWRDYPVPPEH--LPLQPRNIMAVTGNMEAMSLLILSG 238 HPLF E P A W + PE+ LPL+P A +MEA++ +L+G Sbjct: 181 DRHPLF---AEAQPTLERIAACDWVMHGFLPENLVLPLRPSRSRATAYHMEAVAHAVLAG 237 Query: 239 QHLGYLPEEMGRDYEARGQMRALNRERLSYEVGISVVTNRQSVNEPIVAAFLDDLQQMQ 297 HLGYLP + RG+MRAL ERLSY V S++ AF+DDL Q+ Sbjct: 238 THLGYLPTHYAEAWIERGRMRALLPERLSYPVEHSMIVYAGRPLSEAARAFIDDLLQVH 296 >PA0289 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 320 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 157/304 (51%), Gaps = 13/304 (4%) Query: 1 MLNNVFDLDLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRA 60 ML N+ D+DLR++R F A+V++ G +AAQARLN S +S + LE+RLG+ LC RG Sbjct: 5 MLGNINDIDLRMLRTFCAIVEAGGFTAAQARLNTSLSRLSVLVRDLEVRLGYSLCRRGNG 64 Query: 61 GFKLTAKGEKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVI 120 GF+LT +G++ D+A + + F + R L R L +G + QH L I Sbjct: 65 GFQLTEEGQELYDAALGLFSDIARFREQVRGLGGRDREALHLGCVDGVIGQHCLPLPLAI 124 Query: 121 RAFRQRDEAVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQERQVAYCA 180 R FRQR V ++L R P ELE +L +Q+A+G F +S L Y PL +E Q YC Sbjct: 125 RLFRQRAPEVLLKLHTRRPDELEHAVLEERLQLAVGAFHHRLSGLYYQPLFREEQNLYCG 184 Query: 181 PPHPLF----EQP--GEIDPEQAVQYAWAWRDYPVPPEHLPLQPR-NIMAVTGNMEAMSL 233 HP F ++P GEI V + + H P R N MEA++ Sbjct: 185 SAHPFFARADDEPTLGEICAADYVGRGY------MAENHRPHDLRFNQGTDAYTMEAIAT 238 Query: 234 LILSGQHLGYLPEEMGRDYEARGQMRALNRERLSYEVGISVVTNRQSVNEPIVAAFLDDL 293 L+ SG ++GYLP + A G+MRA+ +L+Y+ +T + P + FL L Sbjct: 239 LVFSGTYIGYLPTHYAATWVAEGRMRAIRPRQLAYDSEFHCITRQGHEERPTLTLFLRSL 298 Query: 294 QQMQ 297 + Q Sbjct: 299 FEAQ 302 >PA1422 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/286 (37%), Positives = 153/286 (53%), Gaps = 1/286 (0%) Query: 9 DLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAKG 68 DLRL+R+F AVV G +AAQ LN+ S IST ++ LE +LG LC RGR GF LT+KG Sbjct: 7 DLRLLRIFAAVVRHQGFAAAQQELNLSTSAISTYMSQLENQLGIVLCHRGRGGFSLTSKG 66 Query: 69 EKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVIRAFRQRDE 128 E F R++ L F A L L G L++G++ T + LA+VI AF + Sbjct: 67 ELFHQETLRILGELEGFERYALALKGELRGTLNLGVLDSTVSDPALPLAEVIGAFSREHP 126 Query: 129 AVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQERQVAYCAPPHPLFEQ 188 AV + LLV++P EL+ +L +AIG F ++ L Y PL +E+ YC+ HPLF+ Sbjct: 127 AVHLHLLVQSPYELQLSVLENRQDLAIGAFSSRMNGLVYQPLYREQHWLYCSDRHPLFDG 186 Query: 189 PGEIDPEQAVQYAWAWRDYPVPPEHLPLQPRNIMAVTGNMEAMSLLILSGQHLGYLPEEM 248 I + Q R Y E ++ +MEA +LILSG ++GYLPE Sbjct: 187 R-RIPADLITQQRMVGRGYWSQAELARHGFKHSAGTVESMEAQLILILSGGYIGYLPEHY 245 Query: 249 GRDYEARGQMRALNRERLSYEVGISVVTNRQSVNEPIVAAFLDDLQ 294 + +G++RAL Y+ S++ R EP++ AF D L+ Sbjct: 246 AHPWVEQGRLRALLPATFGYQAPFSLILRRGRSREPLIQAFRDQLR 291 >PA0133 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 305 Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 156/292 (53%), Gaps = 2/292 (0%) Query: 2 LNNVFDLDLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAG 61 L V D D+RL+R+F +V+ SAA++ L + +S IS + LE RLG RLC+RGRAG Sbjct: 9 LGQVSDFDIRLLRIFKTIVECGSFSAAESTLGLSRSAISLHMGDLEKRLGMRLCQRGRAG 68 Query: 62 FKLTAKGEKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVIR 121 F LT +G + + + ++ AL F E +L + L G+L+IG++ + R+ + Sbjct: 69 FALTDEGREVYRATQTLLAALEGFRAEVNDLHQHLRGELNIGIINNLVTLPQMRITHALS 128 Query: 122 AFRQRDEAVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQERQVAYCAP 181 A + + VRI + + TP E+E +L+G++ + + +S L+Y PL E YC+ Sbjct: 129 ALKGQGPQVRINIGMTTPNEIELGVLDGHLHVGVVPLISPLSGLEYLPLYDEHAQLYCSR 188 Query: 182 PHPLFEQP-GEIDPEQAVQYAWAWRDYPVPPE-HLPLQPRNIMAVTGNMEAMSLLILSGQ 239 H LFE+ G+I ++ + Y +P E Q N A + E M+ LIL+G Sbjct: 189 GHALFERADGDIAVDEVLAADAVAPSYRLPAEAQARHQELNNSASASDREGMAFLILTGN 248 Query: 240 HLGYLPEEMGRDYEARGQMRALNRERLSYEVGISVVTNRQSVNEPIVAAFLD 291 +GYLP D+ A G +R L ER Y + +++VT + ++ FL+ Sbjct: 249 FIGYLPSHYAADWVAAGMLRPLLPERFHYAIALTIVTRKGRRPNLVLERFLE 300 >mlr6990 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 3/281 (1%) Query: 9 DLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAKG 68 DL L RVF +VV + G++AAQ L++ Q T+S L LE RLG +LCERGR GF LT +G Sbjct: 7 DLHLFRVFESVVRNGGMTAAQMELSLSQPTVSNHLTALEQRLGVKLCERGRRGFSLTEEG 66 Query: 69 EKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVIRAFRQRDE 128 + + + + L + L GK+ +G++ + RLA I + Sbjct: 67 RRVYEISMEITGMLDAGSARLSRVRSALAGKVGVGIVDCLATDPSFRLADAIAELSKAAP 126 Query: 129 AVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQERQVAYCAPPHPLFEQ 188 + ++L + P ++ + + I I IG V+++QY L E +C HPLF + Sbjct: 127 EIELDLKIMRPNDITKAVAENEIDIGIGGSDIKVASVQYQILYHEEHAVFCGSSHPLFRR 186 Query: 189 PGE-IDPEQAVQYAWAWRDYPVPPEHLPLQPRNIMAVTGNMEAMSLLILSGQHLGYLPEE 247 E I + + W R Y VT ++EA L++LSG +LG LP Sbjct: 187 NDETITSAECYGHPWVERGYWYGIRRHRFDTAASNRVTFDIEAQLLMVLSGAYLGVLPIH 246 Query: 248 MGRDYEARGQMR--ALNRERLSYEVGISVVTNRQSVNEPIV 286 R +E +G++R L E S ++ ++ T Q+ N V Sbjct: 247 FARVFEQQGRLRRLPLADEAYSADIDVATRTGEQAANVAYV 287